[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5608	7972297	NM_005845	ABCC4		ATP-binding cassette, sub-family C (CFTR/MRP), member 4

Fetching correlation data, please wait...
Getting list of correlations for id 5608.
Getting list of p-values for id 5608.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.109 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7972297	8108847	NM_183401	RNF14	0.728161	1.353047e-18	2.344425e-14	2.344425e-14
2	7972297	8085263	NM_018447	TMEM111	0.707122	3.442979e-17	5.965650e-13	2.982825e-13
3	7972297	8091452	NM_001079809	TMEM183B	0.703965	5.459948e-17	9.460452e-13	3.153484e-13
4	7972297	8120251	NM_033480	FBXO9	0.698180	1.251486e-16	2.168450e-12	5.421124e-13
5	7972297	8128683	NM_003795	SNX3	0.698042	1.276296e-16	2.211438e-12	4.422876e-13
6	7972297	7928019	NM_033500	HK1	0.696815	1.517698e-16	2.629715e-12	4.382859e-13
7	7972297	7908867	NM_138391	TMEM183A	0.696157	1.665017e-16	2.884975e-12	4.121394e-13
8	7972297	8072113	NM_001013694	SRRD	0.695535	1.816701e-16	3.147799e-12	3.934748e-13
9	7972297	8138045	NM_014413	EIF2AK1	0.691567	3.154460e-16	5.465733e-12	6.073037e-13
10	7972297	8021081	NM_001128588	SLC14A1	0.688953	4.515015e-16	7.823166e-12	7.823166e-13
11	7972297	8039961	NR_024080	ACP1	0.686133	6.620300e-16	1.147099e-11	1.042818e-12
12	7972297	7898894	NM_020362	C1orf128	0.685130	7.577775e-16	1.313001e-11	1.094168e-12
13	7972297	8026698	NM_001033549	C19orf62	0.685095	7.612998e-16	1.319104e-11	1.014695e-12
14	7972297	8084345	NM_004068	AP2M1	0.683246	9.751535e-16	1.689649e-11	1.206892e-12
15	7972297	8163896	NM_004099	STOM	0.682110	1.134259e-15	1.965330e-11	1.310220e-12
16	7972297	8018097	NM_001098832	FAM104A	0.680497	1.404318e-15	2.433262e-11	1.520788e-12
17	7972297	8142886	NM_003344	UBE2H	0.680151	1.469940e-15	2.546965e-11	1.498214e-12
18	7972297	8020508	NM_003831	RIOK3	0.680073	1.485068e-15	2.573178e-11	1.429543e-12
19	7972297	7948534	NM_001923	DDB1	0.678527	1.819312e-15	3.152322e-11	1.659117e-12
20	7972297	7973067	NM_000270	PNP	0.669236	6.008838e-15	1.041151e-10	5.205757e-12
21	7972297	8058221	NM_015049	TRAK2	0.667769	7.227799e-15	1.252361e-10	5.963623e-12
22	7972297	7977736	NM_032846	RAB2B	0.667669	7.318902e-15	1.268146e-10	5.764301e-12
23	7972297	7915472	NM_006516	SLC2A1	0.667330	7.636732e-15	1.323217e-10	5.753116e-12
24	7972297	8060379	NM_178578	PSMF1	0.665762	9.290638e-15	1.609789e-10	6.707454e-12
25	7972297	7944560	NM_015313	ARHGEF12	0.656476	2.895925e-14	5.017770e-10	2.007108e-11
26	7972297	8055261	NM_032144	RAB6C	0.654689	3.587549e-14	6.216146e-10	2.390826e-11
27	7972297	8034299	NM_032377	ELOF1	0.654314	3.752050e-14	6.501178e-10	2.407844e-11
28	7972297	8176174	NM_002436	MPP1	0.653975	3.906503e-14	6.768797e-10	2.417428e-11
29	7972297	8071301	NM_152906	C22orf25	0.650780	5.704123e-14	9.883534e-10	3.408115e-11
30	7972297	7926239	NM_001008211	OPTN	0.649443	6.673652e-14	1.156344e-9	3.854479e-11
31	7972297	8036913	NM_000713	BLVRB	0.647908	7.984476e-14	1.383470e-9	4.462807e-11
32	7972297	8151592	NM_001738	CA1	0.647640	8.237641e-14	1.427336e-9	4.460425e-11
33	7972297	7899534	NM_203342	EPB41	0.647567	8.307952e-14	1.439519e-9	4.362178e-11
34	7972297	7936673	NM_001005339	RGS10	0.647371	8.499359e-14	1.472684e-9	4.331424e-11
35	7972297	7938485	NM_014632	MICAL2	0.646321	9.600815e-14	1.663533e-9	4.752952e-11
36	7972297	8101828	NM_005723	TSPAN5	0.644334	1.207533e-13	2.092292e-9	5.811922e-11
37	7972297	8136341	NM_199186	BPGM	0.641880	1.599082e-13	2.770729e-9	7.488457e-11
38	7972297	8156706	NM_003275	TMOD1	0.641421	1.684834e-13	2.919312e-9	7.682399e-11
39	7972297	7974781	NM_021003	PPM1A	0.641032	1.760869e-13	3.051058e-9	7.823225e-11
40	7972297	8049574	NM_080678	UBE2F	0.639115	2.187591e-13	3.790440e-9	9.476099e-11
41	7972297	7999532	NM_002094	GSPT1	0.638982	2.220710e-13	3.847825e-9	9.384938e-11
42	7972297	7999889	NM_016641	GDE1	0.637084	2.748353e-13	4.762071e-9	1.133826e-10
43	7972297	8149330	NM_147780	CTSB	0.636830	2.827704e-13	4.899563e-9	1.139433e-10
44	7972297	8108620	NM_144723	ZMAT2	0.633120	4.269867e-13	7.398398e-9	1.681454e-10
45	7972297	8172538	NM_007075	WDR45	0.632898	4.375822e-13	7.581987e-9	1.684886e-10
46	7972297	7951077	NM_144665	SESN3	0.632042	4.808319e-13	8.331375e-9	1.811168e-10
47	7972297	7997272	NM_007285	GABARAPL2	0.631157	5.298712e-13	9.181079e-9	1.953421e-10
48	7972297	7980080	NM_001249	ENTPD5	0.630996	5.392833e-13	9.344162e-9	1.946700e-10
49	7972297	7965343	NM_172240	POC1B	0.630409	5.750266e-13	9.963486e-9	2.033364e-10
50	7972297	8143387	NM_013446	MKRN1	0.629997	6.014817e-13	1.042187e-8	2.084375e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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