[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5421	8050766	NM_004036	ADCY3		adenylate cyclase 3

Fetching correlation data, please wait...
Getting list of correlations for id 5421.
Getting list of p-values for id 5421.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8050766	8171079	NM_012227	GTPBP6	0.635744	3.192206e-13	5.531135e-9	5.531135e-9
2	8050766	7939365	NM_014344	FJX1	0.630548	5.663735e-13	9.813554e-9	4.906777e-9
3	8050766	8049919	NM_152783	D2HGDH	0.609832	5.025446e-12	8.707591e-8	2.902530e-8
4	8050766	7898585	NM_182744	NBL1	0.599194	1.451547e-11	2.515096e-7	6.287741e-8
5	8050766	8085116	NM_014674	EDEM1	0.590587	3.328967e-11	5.768101e-7	1.153620e-7
6	8050766	8003926	NM_001136046	ZMYND15	0.590288	3.424682e-11	5.933947e-7	9.889911e-8
7	8050766	8032839	NM_032108	SEMA6B	0.580384	8.631926e-11	1.495654e-6	2.136648e-7
8	8050766	8025237	NM_001080429	KIAA1543	0.579741	9.155738e-11	1.586415e-6	1.983018e-7
9	8050766	8045030	NM_001080527	MYO7B	0.577008	1.174678e-10	2.035364e-6	2.261515e-7
10	8050766	7907882	NM_020950	KIAA1614	0.576033	1.283109e-10	2.223243e-6	2.223243e-7
11	8050766	8035408	NM_000923	PDE4C	0.572610	1.745532e-10	3.024484e-6	2.749531e-7
12	8050766	7992302	NM_020825	CRAMP1L	0.569416	2.318870e-10	4.017906e-6	3.348255e-7
13	8050766	7911634	NM_178545	TMEM52	0.565917	3.154559e-10	5.465905e-6	4.204542e-7
14	8050766	7949046	NM_001033678	TRPT1	0.564914	3.443083e-10	5.965830e-6	4.261307e-7
15	8050766	7899821	NM_020888	KIAA1522	0.563245	3.980450e-10	6.896925e-6	4.597950e-7
16	8050766	8036923	NM_004756	NUMBL	0.561819	4.502456e-10	7.801406e-6	4.875879e-7
17	8050766	7928645	NM_001099338	FAM22A	0.561646	4.570288e-10	7.918938e-6	4.658199e-7
18	8050766	7952179	NM_002105	H2AFX	0.560950	4.852434e-10	8.407813e-6	4.671007e-7
19	8050766	7928653	NM_001099338	FAM22A	0.560023	5.254417e-10	9.104328e-6	4.791751e-7
20	8050766	8027574	NM_022467	CHST8	0.559583	5.456180e-10	9.453923e-6	4.726962e-7
21	8050766	8031999	NM_003712	PPAP2C	0.558924	5.772485e-10	1.000198e-5	4.762850e-7
22	8050766	8077238	NM_152783	D2HGDH	0.554912	8.113324e-10	1.405796e-5	6.389980e-7
23	8050766	8098942	NM_005663	WHSC2	0.552232	1.015913e-9	1.760272e-5	7.653358e-7
24	8050766	8094520	NM_032456	PCDH7	0.552162	1.021892e-9	1.770632e-5	7.377634e-7
25	8050766	8002342	ENST00000458775		-0.549083	1.319892e-9	2.286977e-5	9.147908e-7
26	8050766	8065427	NM_178311	GGTLC1	0.547436	1.511864e-9	2.619606e-5	1.007541e-6
27	8050766	8133459	NM_003388	CLIP2	0.546402	1.645835e-9	2.851738e-5	1.056199e-6
28	8050766	7992271	NM_016111	TELO2	0.546062	1.692327e-9	2.932295e-5	1.047248e-6
29	8050766	8071745	NM_182520	C22orf15	0.544066	1.991602e-9	3.450850e-5	1.189948e-6
30	8050766	7944530	NM_178507	OAF	0.543910	2.017025e-9	3.494899e-5	1.164966e-6
31	8050766	8089299	NM_001777	CD47	-0.542503	2.260905e-9	3.917470e-5	1.263700e-6
32	8050766	8170786	AF514420	LCA10	0.542338	2.291359e-9	3.970237e-5	1.240699e-6
33	8050766	8073623	NM_001044370	MPPED1	0.542211	2.314903e-9	4.011032e-5	1.215464e-6
34	8050766	8165171	NM_019892	INPP5E	0.541657	2.420797e-9	4.194514e-5	1.233681e-6
35	8050766	8032770	NM_016539	SIRT6	0.540596	2.636954e-9	4.569050e-5	1.305443e-6
36	8050766	7923319	NM_016456	TMEM9	0.540392	2.680465e-9	4.644441e-5	1.290122e-6
37	8050766	8013061	NM_012452	TNFRSF13B	0.540244	2.712606e-9	4.700132e-5	1.270306e-6
38	8050766	7959195	NM_001033677	CABP1	0.539686	2.836804e-9	4.915331e-5	1.293508e-6
39	8050766	8090639	NM_014602	PIK3R4	-0.539240	2.939920e-9	5.093999e-5	1.306154e-6
40	8050766	8042119	NM_022894	PAPOLG	-0.538896	3.021942e-9	5.236119e-5	1.309030e-6
41	8050766	8031511	NM_153219	ZNF524	0.538383	3.148506e-9	5.455416e-5	1.330589e-6
42	8050766	8050352	NM_012344	NTSR2	0.538001	3.245787e-9	5.623976e-5	1.339042e-6
43	8050766	8038192	NM_000148	FUT1	0.537590	3.354055e-9	5.811571e-5	1.351528e-6
44	8050766	7970395	NM_006001	TUBA3C	0.536970	3.523599e-9	6.105341e-5	1.387577e-6
45	8050766	7994985	NM_014712	SETD1A	0.536431	3.677605e-9	6.372187e-5	1.416042e-6
46	8050766	8010287	NM_030968	C1QTNF1	0.536304	3.714684e-9	6.436433e-5	1.399225e-6
47	8050766	8067242	ENST00000457363		0.535835	3.855316e-9	6.680107e-5	1.421299e-6
48	8050766	8109403	NR_024152	MFAP3	-0.534029	4.446139e-9	7.703824e-5	1.604963e-6
49	8050766	8039577	NM_024303	ZSCAN5A	0.531597	5.380311e-9	9.322465e-5	1.902544e-6
50	8050766	8049187	NM_025202	EFHD1	0.531325	5.495495e-9	9.522043e-5	1.904409e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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