[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6708	8059019	NM_057093	CRYBA2		crystallin, beta A2

Fetching correlation data, please wait...
Getting list of correlations for id 6708.
Getting list of p-values for id 6708.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8059019	8043283	NM_018433	KDM3A	-0.782312	6.646562e-23	1.151650e-18	1.151650e-18
2	8059019	8100714	NM_001031732	YTHDC1	-0.781291	8.222543e-23	1.424720e-18	7.123600e-19
3	8059019	7929201	NM_003972	BTAF1	-0.778544	1.449306e-22	2.511212e-18	8.370706e-19
4	8059019	8079021	NM_001904	CTNNB1	-0.776188	2.341461e-22	4.057050e-18	1.014263e-18
5	8059019	7898377	NM_014675	CROCC	0.771631	5.825118e-22	1.009318e-17	2.018636e-18
6	8059019	8050565	NM_015317	PUM2	-0.761352	4.221797e-21	7.315108e-17	1.219185e-17
7	8059019	8039524	NM_152600	ZNF579	0.758062	7.793965e-21	1.350460e-16	1.929229e-17
8	8059019	8166956	NM_021140	KDM6A	-0.757219	9.105527e-21	1.577715e-16	1.972143e-17
9	8059019	8079079	NM_005385	NKTR	-0.756967	9.537745e-21	1.652605e-16	1.836228e-17
10	8059019	8151149	NM_006421	ARFGEF1	-0.755855	1.169467e-20	2.026336e-16	2.026336e-17
11	8059019	8061324	NM_012255	XRN2	-0.753348	1.844851e-20	3.196573e-16	2.905975e-17
12	8059019	7972069	NM_015057	MYCBP2	-0.753018	1.958094e-20	3.392789e-16	2.827324e-17
13	8059019	7947991	NM_015231	NUP160	-0.752448	2.169627e-20	3.759312e-16	2.891778e-17
14	8059019	7925565	NM_031844	HNRNPU	-0.751722	2.472124e-20	4.283449e-16	3.059606e-17
15	8059019	8108134	NM_014829	DDX46	-0.751615	2.519875e-20	4.366187e-16	2.910792e-17
16	8059019	7908978	NM_014827	ZC3H11A	-0.750954	2.836312e-20	4.914478e-16	3.071549e-17
17	8059019	7907790	NM_014810	CEP350	-0.748836	4.133372e-20	7.161894e-16	4.212879e-17
18	8059019	8062492	NM_020336	RALGAPB	-0.748395	4.468472e-20	7.742522e-16	4.301401e-17
19	8059019	8052443	NM_014709	USP34	-0.747641	5.102920e-20	8.841829e-16	4.653594e-17
20	8059019	7955019	NM_152641	ARID2	-0.747461	5.266926e-20	9.126003e-16	4.563001e-17
21	8059019	7999326	NM_003470	USP7	-0.747073	5.638352e-20	9.769573e-16	4.652177e-17
22	8059019	7922912	NM_003292	TPR	-0.746255	6.506633e-20	1.127404e-15	5.124565e-17
23	8059019	8009526	NM_001050	SSTR2	0.745374	7.587404e-20	1.314670e-15	5.715955e-17
24	8059019	7978866	NM_004713	SDCCAG1	-0.745209	7.807763e-20	1.352851e-15	5.636880e-17
25	8059019	8113469	NM_014819	PJA2	-0.744427	8.943042e-20	1.549561e-15	6.198244e-17
26	8059019	8152148	NM_015902	UBR5	-0.744349	9.065157e-20	1.570720e-15	6.041230e-17
27	8059019	7967420	NM_018183	SBNO1	-0.744284	9.167557e-20	1.588463e-15	5.883195e-17
28	8059019	7917156	NM_003902	FUBP1	-0.743534	1.043698e-19	1.808416e-15	6.458629e-17
29	8059019	8041283	NM_016252	BIRC6	-0.743528	1.044805e-19	1.810334e-15	6.242530e-17
30	8059019	8083094	NM_006506	RASA2	-0.742012	1.356005e-19	2.349549e-15	7.831831e-17
31	8059019	7930454	NM_145341	PDCD4	-0.741410	1.503157e-19	2.604519e-15	8.401675e-17
32	8059019	8144812	NM_006197	PCM1	-0.741405	1.504295e-19	2.606491e-15	8.145285e-17
33	8059019	8168316	NM_181672	OGT	-0.741224	1.551563e-19	2.688393e-15	8.146646e-17
34	8059019	8098512	NM_021942	C4orf41	-0.740985	1.616322e-19	2.800600e-15	8.237060e-17
35	8059019	7897890	NM_015378	VPS13D	-0.739372	2.125766e-19	3.683315e-15	1.052376e-16
36	8059019	8085815	NM_001068	TOP2B	-0.738808	2.338519e-19	4.051952e-15	1.125542e-16
37	8059019	8083429	NM_021038	MBNL1	-0.738244	2.572017e-19	4.456534e-15	1.204469e-16
38	8059019	8066009	NM_184234	RBM39	-0.738166	2.605979e-19	4.515380e-15	1.188258e-16
39	8059019	8016168	NM_133373	PLCD3	0.737991	2.683660e-19	4.649978e-15	1.192302e-16
40	8059019	7916185	NM_001009881	ZCCHC11	-0.737712	2.812658e-19	4.873493e-15	1.218373e-16
41	8059019	8100251	NM_015030	FRYL	-0.737163	3.084066e-19	5.343761e-15	1.303356e-16
42	8059019	8120441	NM_015153	PHF3	-0.736645	3.363399e-19	5.827762e-15	1.387562e-16
43	8059019	7964937	NM_144982	ZFC3H1	-0.736362	3.526730e-19	6.110765e-15	1.421108e-16
44	8059019	7916443	NM_015306	USP24	-0.736349	3.534090e-19	6.123518e-15	1.391709e-16
45	8059019	7960221	NM_005056	KDM5A	-0.735995	3.749047e-19	6.495973e-15	1.443550e-16
46	8059019	8101228	NM_144571	CNOT6L	-0.735800	3.872846e-19	6.710480e-15	1.458800e-16
47	8059019	8062880	NM_003404	YWHAB	-0.735537	4.046047e-19	7.010586e-15	1.491614e-16
48	8059019	8133704	NM_001110199	SRRM3	0.735464	4.095718e-19	7.096651e-15	1.478469e-16
49	8059019	8108510	NM_020690	ANKHD1-EIF4EBP3	-0.734939	4.469055e-19	7.743532e-15	1.580313e-16
50	8059019	8128894	NM_002912	REV3L	-0.734675	4.668789e-19	8.089611e-15	1.617922e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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