[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5153	7992934	NM_005223	DNASE1		deoxyribonuclease I

Fetching correlation data, please wait...
Getting list of correlations for id 5153.
Getting list of p-values for id 5153.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7992934	8172561	NM_006150	PRICKLE3	0.561504	4.626463e-10	8.016273e-6	8.016273e-6
2	7992934	7923233	NM_017596	KIF21B	0.533767	4.538676e-9	7.864164e-5	3.932082e-5
3	7992934	8148923	NM_014665	LRRC14	0.533156	4.761948e-9	8.251027e-5	2.750342e-5
4	7992934	8110327	NM_006480	RGS14	0.522378	1.093482e-8	1.894676e-4	4.736691e-5
5	7992934	7937415	NM_020901	PHRF1	0.518345	1.481562e-8	2.567103e-4	5.134206e-5
6	7992934	8016159	NM_024819	DCAKD	0.515538	1.825979e-8	3.163874e-4	5.273123e-5
7	7992934	8074927	NR_024448	LOC91316	0.514118	2.028185e-8	3.514236e-4	5.020337e-5
8	7992934	7915743	NM_001114938	CCDC17	0.508490	3.061018e-8	5.303826e-4	6.629783e-5
9	7992934	8165462	NM_013366	ANAPC2	0.504601	4.050827e-8	7.018867e-4	7.798741e-5
10	7992934	7944113	NM_014956	CEP164	0.503518	4.376657e-8	7.583434e-4	7.583434e-5
11	7992934	7899323	NM_032872	SYTL1	0.500232	5.525989e-8	9.574880e-4	8.704437e-5
12	7992934	8014794	NM_199247	CACNB1	0.500221	5.530043e-8	9.581905e-4	7.984921e-5
13	7992934	8137101	NM_003575	ZNF282	0.498306	6.328111e-8	1.096472e-3	8.434399e-5
14	7992934	8099362	ENST00000411154		0.497432	6.727670e-8	1.165703e-3	8.326453e-5
15	7992934	8010787	NM_173620	HEXDC	0.494138	8.460351e-8	1.465925e-3	9.772833e-5
16	7992934	7931561	NM_145806	ZNF511	0.489755	1.143565e-7	1.981455e-3	1.238409e-4
17	7992934	8076909	NM_020461	TUBGCP6	0.487614	1.322813e-7	2.292038e-3	1.348258e-4
18	7992934	8145227	NM_001160036	RHOBTB2	0.487526	1.330727e-7	2.305751e-3	1.280973e-4
19	7992934	8080320	NM_007184	NISCH	0.486711	1.406227e-7	2.436569e-3	1.282405e-4
20	7992934	7992347	NM_015133	MAPK8IP3	0.486123	1.463255e-7	2.535382e-3	1.267691e-4
21	7992934	8036207	NM_139239	NFKBID	0.485588	1.516907e-7	2.628345e-3	1.251593e-4
22	7992934	8084219	NM_017644	KLHL24	-0.483899	1.699251e-7	2.944292e-3	1.338314e-4
23	7992934	8028656	NM_022835	PLEKHG2	0.483733	1.718241e-7	2.977196e-3	1.294433e-4
24	7992934	8090420	NM_016372	TPRA1	0.482742	1.835891e-7	3.181049e-3	1.325437e-4
25	7992934	7911458	NM_030649	ACAP3	0.480262	2.165037e-7	3.751360e-3	1.500544e-4
26	7992934	8139281	NM_013284	POLM	0.479849	2.225050e-7	3.855345e-3	1.482825e-4
27	7992934	7992998	NM_001142290	MGRN1	0.479396	2.292714e-7	3.972585e-3	1.471328e-4
28	7992934	8099037	NM_001146069	MFSD10	0.479294	2.308179e-7	3.999382e-3	1.428351e-4
29	7992934	7954655	NM_030653	DDX11	0.478923	2.365385e-7	4.098503e-3	1.413277e-4
30	7992934	7985226	NM_206839	MORF4L1	-0.477153	2.657325e-7	4.604347e-3	1.534782e-4
31	7992934	7959123	NM_006253	PRKAB1	0.475505	2.959752e-7	5.128362e-3	1.654310e-4
32	7992934	8066641	NM_022095	ZNF335	0.475308	2.998002e-7	5.194638e-3	1.623324e-4
33	7992934	7991779	NM_032039	ITFG3	0.475090	3.040942e-7	5.269041e-3	1.596679e-4
34	7992934	7997909	NM_003119	SPG7	0.474579	3.143750e-7	5.447176e-3	1.602111e-4
35	7992934	8100532	NM_032313	C4orf14	-0.473793	3.308594e-7	5.732801e-3	1.637943e-4
36	7992934	8003448	NM_013275	ANKRD11	0.473498	3.372412e-7	5.843377e-3	1.623160e-4
37	7992934	7999754	NM_022166	XYLT1	0.472774	3.534262e-7	6.123816e-3	1.655085e-4
38	7992934	8009796	NM_014738	KIAA0195	0.472467	3.605128e-7	6.246606e-3	1.643844e-4
39	7992934	8043666	NM_017623	CNNM3	0.472322	3.639065e-7	6.305407e-3	1.616771e-4
40	7992934	8131265	NM_014855	KIAA0415	0.471403	3.861205e-7	6.690310e-3	1.672577e-4
41	7992934	7983021	NR_015346	JMJD7-PLA2G4B	0.470991	3.964967e-7	6.870098e-3	1.675634e-4
42	7992934	8092201	NM_024665	TBL1XR1	-0.470931	3.980203e-7	6.896498e-3	1.642023e-4
43	7992934	7941879	NM_198517	TBC1D10C	0.470638	4.055957e-7	7.027757e-3	1.634362e-4
44	7992934	7919208	NR_002328	GNRHR2	0.470622	4.060099e-7	7.034933e-3	1.598848e-4
45	7992934	8010638	NM_004712	HGS	0.470505	4.090799e-7	7.088128e-3	1.575140e-4
46	7992934	8010918	NM_001128159	VPS53	0.468725	4.584543e-7	7.943638e-3	1.726878e-4
47	7992934	8026610	NM_015260	SIN3B	0.467279	5.026778e-7	8.709899e-3	1.853170e-4
48	7992934	7941127	NM_006782	ZFPL1	0.467244	5.038031e-7	8.729397e-3	1.818624e-4
49	7992934	8139468	NM_004749	TBRG4	0.465830	5.510506e-7	9.548053e-3	1.948582e-4
50	7992934	8074030	NM_014678	PPP6R2	0.465698	5.556918e-7	9.628471e-3	1.925694e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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