Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5690	7903239	NM_000028	AGL		amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7903239	7972190	NM_022118	RBM26		0.915642	1.467953e-42	2.543521e-38	2.543521e-38
2	7903239	8070341	NM_033656	BRWD1		0.915574	1.527635e-42	2.646932e-38	1.323466e-38
3	7903239	7987325	NM_014691	AQR		0.912244	1.027689e-41	1.780676e-37	5.935588e-38
4	7903239	8052845	NM_022173	TIA1		0.910806	2.285886e-41	3.960755e-37	9.901887e-38
5	7903239	8083183	NM_001080415	SR140		0.910163	3.255203e-41	5.640290e-37	1.128058e-37
6	7903239	8114861	NM_020117	LARS		0.908770	6.936051e-41	1.201810e-36	2.003016e-37
7	7903239	8103106	NM_006726	LRBA		0.907709	1.223616e-40	2.120160e-36	3.028800e-37
8	7903239	7924351	NM_004446	EPRS		0.902217	2.083142e-39	3.609460e-35	4.511825e-36
9	7903239	7917156	NM_003902	FUBP1		0.901133	3.571984e-39	6.189177e-35	6.876864e-36
10	7903239	7943620	NM_000051	ATM		0.900771	4.271402e-39	7.401059e-35	7.401059e-36
11	7903239	7916443	NM_015306	USP24		0.900660	4.513419e-39	7.820401e-35	7.109455e-36
12	7903239	8136401	NM_015135	NUP205		0.899805	6.860806e-39	1.188772e-34	9.906432e-36
13	7903239	7987981	NM_174916	UBR1		0.899676	7.308957e-39	1.266423e-34	9.741715e-36
14	7903239	8054614	NM_022662	ANAPC1		0.899651	7.396367e-39	1.281568e-34	9.154060e-36
15	7903239	7953878	NM_001004419	CLEC2D		0.899593	7.609271e-39	1.318458e-34	8.789723e-36
16	7903239	8117140	NM_017774	CDKAL1		0.898701	1.172523e-38	2.031631e-34	1.269769e-35
17	7903239	7988713	NM_017672	TRPM7		0.898135	1.539013e-38	2.666647e-34	1.568616e-35
18	7903239	8092849	NM_024524	ATP13A3		0.897978	1.659635e-38	2.875650e-34	1.597583e-35
19	7903239	8047097	NM_014905	GLS		0.896639	3.135983e-38	5.433718e-34	2.859852e-35
20	7903239	8147156	NM_007013	WWP1		0.896432	3.457891e-38	5.991489e-34	2.995744e-35
21	7903239	7989128	NM_144571	CNOT6L		0.896385	3.534850e-38	6.124834e-34	2.916588e-35
22	7903239	8023195	NM_005901	SMAD2		0.896055	4.129747e-38	7.155613e-34	3.252551e-35
23	7903239	7936826	NM_022466	IKZF5		0.895948	4.341913e-38	7.523232e-34	3.270971e-35
24	7903239	7929201	NM_003972	BTAF1		0.895516	5.312756e-38	9.205413e-34	3.835589e-35
25	7903239	8050565	NM_015317	PUM2		0.893372	1.430467e-37	2.478569e-33	9.914278e-35
26	7903239	8113157	NM_014639	TTC37		0.893215	1.536394e-37	2.662110e-33	1.023889e-34
27	7903239	8054135	NM_012214	MGAT4A		0.892882	1.788511e-37	3.098953e-33	1.147760e-34
28	7903239	8099926	NM_001100399	PDS5A		0.892865	1.802362e-37	3.122953e-33	1.115340e-34
29	7903239	8001211	NM_030790	ITFG1		0.892410	2.214659e-37	3.837340e-33	1.323221e-34
30	7903239	8101228	NM_144571	CNOT6L		0.892243	2.388410e-37	4.138398e-33	1.379466e-34
31	7903239	7956697	NM_015026	MON2		0.892219	2.414702e-37	4.183954e-33	1.349662e-34
32	7903239	8129193	NM_001042475	C6orf204		0.891650	3.119741e-37	5.405576e-33	1.689242e-34
33	7903239	8052443	NM_014709	USP34		0.891547	3.268434e-37	5.663216e-33	1.716126e-34
34	7903239	7969881	NM_003291	TPP2		0.891336	3.591802e-37	6.223516e-33	1.830446e-34
35	7903239	8151149	NM_006421	ARFGEF1		0.891263	3.710877e-37	6.429837e-33	1.837096e-34
36	7903239	8105778	NM_181523	PIK3R1		0.890419	5.406514e-37	9.367867e-33	2.602185e-34
37	7903239	8113083	NM_032042	FAM172A		0.890026	6.434083e-37	1.114834e-32	3.013064e-34
38	7903239	8154531	NM_017925	DENND4C		0.889957	6.633094e-37	1.149316e-32	3.024516e-34
39	7903239	7916562	NM_002136	HNRNPA1		0.889410	8.441655e-37	1.462686e-32	3.750476e-34
40	7903239	8051882	NM_133259	LRPPRC		0.888514	1.249669e-36	2.165301e-32	5.413253e-34
41	7903239	8053046	NM_003584	DUSP11		0.887776	1.721869e-36	2.983482e-32	7.276787e-34
42	7903239	8107375	NM_022828	YTHDC2		0.887226	2.183090e-36	3.782641e-32	9.006287e-34
43	7903239	8052526	NM_003400	XPO1		0.887121	2.283865e-36	3.957253e-32	9.202915e-34
44	7903239	8051928	NM_006036	PREPL		0.886921	2.488907e-36	4.312530e-32	9.801205e-34
45	7903239	8017235	NM_006380	APPBP2		0.886506	2.973150e-36	5.151577e-32	1.144795e-33
46	7903239	7967386	NM_022782	MPHOSPH9		0.886073	3.576025e-36	6.196179e-32	1.346995e-33
47	7903239	8096556	NM_015143	METAP1		0.885336	4.889947e-36	8.472811e-32	1.802726e-33
48	7903239	8106784	NM_002890	RASA1		0.884877	5.934857e-36	1.028333e-31	2.142360e-33
49	7903239	8144812	NM_006197	PCM1		0.884843	6.019572e-36	1.043011e-31	2.128594e-33
50	7903239	8099649	NM_001358	DHX15		0.884823	6.069906e-36	1.051733e-31	2.103465e-33

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.