[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4545	8018107	NM_012121	CDC42EP4		CDC42 effector protein (Rho GTPase binding) 4

Fetching correlation data, please wait...
Getting list of correlations for id 4545.
Getting list of p-values for id 4545.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8018107	7947991	NM_015231	NUP160	-0.660141	1.857749e-14	3.218922e-10	3.218922e-10
2	8018107	8159243	NM_014811	KIAA0649	0.648913	7.100963e-14	1.230384e-9	6.151919e-10
3	8018107	8157383	NM_032888	COL27A1	0.647088	8.783693e-14	1.521950e-9	5.073168e-10
4	8018107	8150433	NM_152568	NKX6-3	0.640169	1.941995e-13	3.364895e-9	8.412238e-10
5	8018107	8095216	NM_020722	KIAA1211	0.639902	2.001517e-13	3.468029e-9	6.936057e-10
6	8018107	8086985	NM_000094	COL7A1	0.636838	2.825041e-13	4.894949e-9	8.158248e-10
7	8018107	8173613	NM_016120	RLIM	-0.635101	3.428804e-13	5.941089e-9	8.487270e-10
8	8018107	8168424	NM_006517	SLC16A2	0.633475	4.105884e-13	7.114266e-9	8.892832e-10
9	8018107	7994260	NM_006040	HS3ST4	0.631536	5.083141e-13	8.807559e-9	9.786176e-10
10	8018107	8046975	NM_032168	WDR75	-0.629403	6.417303e-13	1.111926e-8	1.111926e-9
11	8018107	7919436	NM_178230	PPIAL4A	-0.629325	6.472408e-13	1.121474e-8	1.019522e-9
12	8018107	8071168	NR_024593	POM121L10P	0.627907	7.549454e-13	1.308094e-8	1.090078e-9
13	8018107	8140730	NM_024315	C7orf23	-0.626446	8.839512e-13	1.531622e-8	1.178171e-9
14	8018107	8131539	NM_018374	TMEM106B	-0.625641	9.639292e-13	1.670200e-8	1.193000e-9
15	8018107	8041149	NM_015131	WDR43	-0.625493	9.793236e-13	1.696874e-8	1.131249e-9
16	8018107	8122409	NM_003630	PEX3	-0.625206	1.010026e-12	1.750073e-8	1.093795e-9
17	8018107	8051882	NM_133259	LRPPRC	-0.624160	1.129611e-12	1.957277e-8	1.151339e-9
18	8018107	7989834	AK296134	C15orf44	-0.624084	1.138886e-12	1.973348e-8	1.096304e-9
19	8018107	7914880	NM_005202	COL8A2	0.624009	1.148093e-12	1.989300e-8	1.047000e-9
20	8018107	7897257	NM_207396	RNF207	0.623647	1.193221e-12	2.067494e-8	1.033747e-9
21	8018107	7994161	NM_006910	RBBP6	-0.623276	1.241434e-12	2.151032e-8	1.024301e-9
22	8018107	7955646	NM_001417	EIF4B	-0.620600	1.648506e-12	2.856366e-8	1.298348e-9
23	8018107	8108435	NM_181838	UBE2D2	-0.618979	1.955104e-12	3.387609e-8	1.472874e-9
24	8018107	8136401	NM_015135	NUP205	-0.618767	1.999095e-12	3.463832e-8	1.443263e-9
25	8018107	8109821	NM_006013	RPL10	-0.618231	2.114500e-12	3.663794e-8	1.465518e-9
26	8018107	8170753	NM_014370	SRPK3	0.618095	2.144749e-12	3.716206e-8	1.429310e-9
27	8018107	8043251	NM_017952	PTCD3	-0.617906	2.187594e-12	3.790444e-8	1.403868e-9
28	8018107	8107520	NM_014350	TNFAIP8	-0.617881	2.193272e-12	3.800282e-8	1.357244e-9
29	8018107	8142110	NM_006754	SYPL1	-0.617078	2.384913e-12	4.132338e-8	1.424944e-9
30	8018107	8175420	NM_002139	RBMX	-0.615758	2.735613e-12	4.739996e-8	1.579999e-9
31	8018107	8019331	NM_001145113	MYADML2	0.614910	2.986580e-12	5.174848e-8	1.669306e-9
32	8018107	8109507	NM_005546	ITK	-0.613901	3.314452e-12	5.742951e-8	1.794672e-9
33	8018107	7993167	NM_024997	ATF7IP2	-0.613893	3.317259e-12	5.747814e-8	1.741762e-9
34	8018107	8054614	NM_022662	ANAPC1	-0.613724	3.375329e-12	5.848433e-8	1.720127e-9
35	8018107	7952601	NM_001143820	ETS1	-0.613593	3.421134e-12	5.927799e-8	1.693657e-9
36	8018107	7945536	NM_016564	CEND1	0.613164	3.575500e-12	6.195269e-8	1.720908e-9
37	8018107	8033825	NM_015719	COL5A3	0.612877	3.682452e-12	6.380585e-8	1.724483e-9
38	8018107	8047641	NM_177538	CYP20A1	-0.612845	3.694670e-12	6.401754e-8	1.684672e-9
39	8018107	7962516	NM_030674	SLC38A1	-0.612821	3.703656e-12	6.417325e-8	1.645468e-9
40	8018107	7950490	hsa-mir-326		0.612490	3.831624e-12	6.639054e-8	1.659764e-9
41	8018107	7957540	NM_014050	MRPL42	-0.612240	3.931091e-12	6.811401e-8	1.661317e-9
42	8018107	8044634	NM_012184	FOXD4L1	0.611535	4.225332e-12	7.321232e-8	1.743151e-9
43	8018107	8053046	NM_003584	DUSP11	-0.611211	4.367229e-12	7.567098e-8	1.759790e-9
44	8018107	8051204	NM_014860	SUPT7L	-0.611094	4.419683e-12	7.657985e-8	1.740451e-9
45	8018107	7946860	NM_000352	ABCC8	0.611032	4.447890e-12	7.706859e-8	1.712635e-9
46	8018107	8005951	NR_000013	SNORD42B	-0.610455	4.717194e-12	8.173483e-8	1.776844e-9
47	8018107	8081564	NM_198196	CD96	-0.609526	5.183925e-12	8.982187e-8	1.911104e-9
48	8018107	8040290	ENST00000364740		0.609259	5.326202e-12	9.228709e-8	1.922648e-9
49	8018107	8145652	NM_015344	LEPROTL1	-0.609188	5.364665e-12	9.295354e-8	1.897011e-9
50	8018107	8066590	NM_003279	TNNC2	0.609056	5.436972e-12	9.420641e-8	1.884128e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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