[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6547	7915170	NM_012333	MYCBP		c-myc binding protein

Fetching correlation data, please wait...
Getting list of correlations for id 6547.
Getting list of p-values for id 6547.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.161 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7915170	7938907	NM_004211	SLC6A5	0.595231	2.133716e-11	3.697089e-7	3.697089e-7
2	7915170	8159142	NM_000093	COL5A1	0.587409	4.495214e-11	7.788857e-7	3.894429e-7
3	7915170	8116579	NM_033260	FOXQ1	0.587069	4.640853e-11	8.041207e-7	2.680402e-7
4	7915170	8161265	NM_001007563	IGFBPL1	0.583135	6.697951e-11	1.160554e-6	2.901385e-7
5	7915170	8067585	NM_080606	BHLHE23	0.577681	1.105028e-10	1.914683e-6	3.829365e-7
6	7915170	7918416	NM_006492	ALX3	0.575743	1.317175e-10	2.282270e-6	3.803783e-7
7	7915170	8028600	NM_001001414	NCCRP1	0.575112	1.394422e-10	2.416115e-6	3.451592e-7
8	7915170	7919347	AK125616	LOC728789	0.573907	1.554005e-10	2.692625e-6	3.365781e-7
9	7915170	7919267	AK125616	LOC728789	0.573907	1.554005e-10	2.692625e-6	2.991805e-7
10	7915170	8037502	NM_001131067	NKPD1	0.573329	1.636735e-10	2.835971e-6	2.835971e-7
11	7915170	8111216	ENST00000426411		0.571564	1.916417e-10	3.320576e-6	3.018706e-7
12	7915170	8157610	NM_032552	DAB2IP	0.570071	2.188199e-10	3.791492e-6	3.159577e-7
13	7915170	8050805	NM_001035256	POMC	0.569997	2.202711e-10	3.816637e-6	2.935875e-7
14	7915170	8065580	NM_080611	DUSP15	0.565083	3.392804e-10	5.878712e-6	4.199080e-7
15	7915170	8040479	NM_182828	GDF7	0.564857	3.460147e-10	5.995397e-6	3.996931e-7
16	7915170	8009517	NM_000346	SOX9	0.563500	3.893308e-10	6.745935e-6	4.216210e-7
17	7915170	7970146	NM_005986	SOX1	0.562261	4.334038e-10	7.509587e-6	4.417404e-7
18	7915170	8076668	BC104183	KIAA1644	0.562150	4.375769e-10	7.581895e-6	4.212164e-7
19	7915170	7940022	NM_178570	RTN4RL2	0.561265	4.722463e-10	8.182612e-6	4.306638e-7
20	7915170	8003948	NM_001014985	GLTPD2	0.559992	5.268151e-10	9.128126e-6	4.564063e-7
21	7915170	8044760	ENST00000430851		0.558972	5.748633e-10	9.960657e-6	4.743170e-7
22	7915170	8042558	NM_024933	ANKRD53	0.558861	5.803825e-10	1.005629e-5	4.571040e-7
23	7915170	8092468	NM_033259	CAMK2N2	0.558062	6.212813e-10	1.076494e-5	4.680409e-7
24	7915170	8046276	NM_001003845	SP5	0.557303	6.627017e-10	1.148263e-5	4.784430e-7
25	7915170	8071541	NR_026815	TMEM191A	0.555776	7.542712e-10	1.306926e-5	5.227703e-7
26	7915170	8065327	NM_033176	NKX2-4	0.555473	7.738488e-10	1.340848e-5	5.157107e-7
27	7915170	7914898	ENST00000312808		0.554420	8.456965e-10	1.465338e-5	5.427179e-7
28	7915170	8060660	NM_052970	HSPA12B	0.552482	9.949807e-10	1.724003e-5	6.157154e-7
29	7915170	7991828	ENST00000431654		0.551847	1.049105e-9	1.817785e-5	6.268223e-7
30	7915170	8016155	NM_006688	C1QL1	0.551447	1.084758e-9	1.879560e-5	6.265201e-7
31	7915170	8084880	NM_005524	HES1	0.551118	1.114889e-9	1.931769e-5	6.231512e-7
32	7915170	8123891	ENST00000410451		0.551027	1.123346e-9	1.946422e-5	6.082568e-7
33	7915170	8091032	NM_023067	FOXL2	0.550762	1.148405e-9	1.989842e-5	6.029824e-7
34	7915170	7897179	NM_001126240	TP73	0.550720	1.152413e-9	1.996786e-5	5.872899e-7
35	7915170	8010614	NM_012418	FSCN2	0.548941	1.335481e-9	2.313987e-5	6.611392e-7
36	7915170	7991459	NM_020211	RGMA	0.548689	1.363547e-9	2.362618e-5	6.562829e-7
37	7915170	8002729	NR_027264	GLG1	-0.547810	1.466029e-9	2.540188e-5	6.865374e-7
38	7915170	7922752	ENST00000362967		0.547719	1.477151e-9	2.559459e-5	6.735419e-7
39	7915170	8020455	NM_005257	GATA6	0.547206	1.540754e-9	2.669665e-5	6.845295e-7
40	7915170	8002322	NR_003610	PDXDC2P	-0.547197	1.541931e-9	2.671704e-5	6.679261e-7
41	7915170	8059014	NM_017521	FEV	0.546614	1.617527e-9	2.802688e-5	6.835825e-7
42	7915170	7937774	NM_016412	IGF2AS	0.545983	1.703260e-9	2.951239e-5	7.026759e-7
43	7915170	8143941	NM_198285	WDR86	0.545706	1.742352e-9	3.018973e-5	7.020868e-7
44	7915170	8059783	NM_019850	NGEF	0.545588	1.759255e-9	3.048261e-5	6.927867e-7
45	7915170	7942693	NM_138706	B3GNT6	0.545464	1.777212e-9	3.079375e-5	6.843055e-7
46	7915170	8019669	NM_000160	GCGR	0.544548	1.915072e-9	3.318245e-5	7.213577e-7
47	7915170	8072931	NM_014291	GCAT	0.544285	1.956546e-9	3.390107e-5	7.212994e-7
48	7915170	7914361	NM_001856	COL16A1	0.544259	1.960674e-9	3.397260e-5	7.077625e-7
49	7915170	7899093	NM_024869	GRRP1	0.543561	2.075052e-9	3.595442e-5	7.337638e-7
50	7915170	7992845	NM_003456	ZNF205	0.543471	2.090360e-9	3.621967e-5	7.243935e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation