[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6043	8132929	NM_001483	GBAS		glioblastoma amplified sequence

Fetching correlation data, please wait...
Getting list of correlations for id 6043.
Getting list of p-values for id 6043.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8132929	8086077	NM_015097	CLASP2	0.764291	2.421432e-21	4.195615e-17	4.195615e-17
2	8132929	7923141	NM_144977	DENND1B	0.761322	4.245632e-21	7.356406e-17	3.678203e-17
3	8132929	8168691	NM_006729	DIAPH2	0.760893	4.601879e-21	7.973675e-17	2.657892e-17
4	8132929	7995583	NM_025134	CHD9	0.753775	1.707682e-20	2.958901e-16	7.397252e-17
5	8132929	8020903	NM_020474	GALNT1	0.752530	2.137872e-20	3.704291e-16	7.408582e-17
6	8132929	7929168	NM_025235	TNKS2	0.746771	5.944937e-20	1.030079e-15	1.716799e-16
7	8132929	8111360	NM_016107	ZFR	0.746561	6.167928e-20	1.068717e-15	1.526738e-16
8	8132929	8113623	NM_021649	TICAM2	0.745568	7.334822e-20	1.270905e-15	1.588631e-16
9	8132929	8146717	NM_013257	SGK3	0.742284	1.294129e-19	2.242338e-15	2.491487e-16
10	8132929	8082607	NM_014382	ATP2C1	0.739889	1.947433e-19	3.374317e-15	3.374317e-16
11	8132929	8107474	NM_005509	DMXL1	0.739222	2.180585e-19	3.778300e-15	3.434818e-16
12	8132929	8078110	NM_014296	CAPN7	0.738460	2.480058e-19	4.297197e-15	3.580997e-16
13	8132929	7969228	NM_001004127	ALG11	0.737404	2.961975e-19	5.132214e-15	3.947857e-16
14	8132929	7979328	NM_014924	ATG14	0.737159	3.086350e-19	5.347719e-15	3.819799e-16
15	8132929	7954940	NM_016488	PPHLN1	0.736662	3.354136e-19	5.811711e-15	3.874474e-16
16	8132929	7970892	NM_052818	N4BP2L1	0.736507	3.442018e-19	5.963985e-15	3.727491e-16
17	8132929	7931873	NM_001494	GDI2	0.735531	4.050062e-19	7.017543e-15	4.127966e-16
18	8132929	8146243	NM_032410	HOOK3	0.734139	5.101760e-19	8.839819e-15	4.911011e-16
19	8132929	8085852	NM_018297	NGLY1	0.733932	5.279709e-19	9.148152e-15	4.814817e-16
20	8132929	8152782	NM_014846	KIAA0196	0.732864	6.295590e-19	1.090837e-14	5.454184e-16
21	8132929	8093130	NM_152617	RNF168	0.732102	7.134204e-19	1.236143e-14	5.886397e-16
22	8132929	8087951	NM_018165	PBRM1	0.731114	8.384618e-19	1.452803e-14	6.603649e-16
23	8132929	8095163	NM_001024924	EXOC1	0.730640	9.058469e-19	1.569561e-14	6.824178e-16
24	8132929	8147483	NM_178812	MTDH	0.728641	1.252259e-18	2.169790e-14	9.040791e-16
25	8132929	7978449	NM_015382	HECTD1	0.727623	1.475250e-18	2.556165e-14	1.022466e-15
26	8132929	8152553	NM_003184	TAF2	0.727589	1.483315e-18	2.570140e-14	9.885153e-16
27	8132929	7910550	NM_005999	TSNAX	0.726750	1.696859e-18	2.940148e-14	1.088944e-15
28	8132929	7918188	NM_013386	SLC25A24	0.726683	1.715195e-18	2.971919e-14	1.061400e-15
29	8132929	7912852	NM_001412	EIF1AX	0.726669	1.718810e-18	2.978182e-14	1.026959e-15
30	8132929	8097704	NM_018241	TMEM184C	0.726313	1.819534e-18	3.152706e-14	1.050902e-15
31	8132929	8089652	NM_025146	NAA50	0.726041	1.900344e-18	3.292725e-14	1.062169e-15
32	8132929	7946815	NM_002645	PIK3C2A	0.725760	1.987432e-18	3.443624e-14	1.076132e-15
33	8132929	8052269	NM_001135597	CCDC88A	0.724767	2.326870e-18	4.031768e-14	1.221748e-15
34	8132929	8106122	NM_002270	TNPO1	0.724428	2.455467e-18	4.254588e-14	1.251349e-15
35	8132929	7909815	NM_018060	IARS2	0.723957	2.645183e-18	4.583308e-14	1.309517e-15
36	8132929	8092564	NM_004593	TRA2B	0.722771	3.189161e-18	5.525859e-14	1.534961e-15
37	8132929	7934812	NM_015045	WAPAL	0.722573	3.289917e-18	5.700439e-14	1.540659e-15
38	8132929	8057554	NM_014412	CACYBP	0.722221	3.476913e-18	6.024448e-14	1.585381e-15
39	8132929	8131479	NM_019005	MIOS	0.722088	3.550239e-18	6.151499e-14	1.577307e-15
40	8132929	8091190	NM_001184	ATR	0.721909	3.651264e-18	6.326546e-14	1.581636e-15
41	8132929	8128472	NM_006828	ASCC3	0.721880	3.667403e-18	6.354509e-14	1.549880e-15
42	8132929	7969935	NM_000123	ERCC5	0.721505	3.889179e-18	6.738780e-14	1.604471e-15
43	8132929	7915995	NM_007051	FAF1	0.720829	4.322335e-18	7.489310e-14	1.741700e-15
44	8132929	7909992	NM_015176	FBXO28	0.720530	4.528483e-18	7.846502e-14	1.783296e-15
45	8132929	7971820	NM_016075	VPS36	0.720434	4.596429e-18	7.964233e-14	1.769830e-15
46	8132929	7970428	NM_001039650	ZMYM5	0.720349	4.657395e-18	8.069868e-14	1.754319e-15
47	8132929	7993889	BC027604	C16orf52	0.719378	5.415453e-18	9.383355e-14	1.996458e-15
48	8132929	7987981	NM_174916	UBR1	0.719047	5.699681e-18	9.875838e-14	2.057466e-15
49	8132929	8006377	NM_001098507	ZNF207	0.718492	6.210296e-18	1.076058e-13	2.196037e-15
50	8132929	7961865	NM_033360	KRAS	0.717985	6.714827e-18	1.163478e-13	2.326956e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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