[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6730	8015526	NM_021078	KAT2A		K(lysine) acetyltransferase 2A

Fetching correlation data, please wait...
Getting list of correlations for id 6730.
Getting list of p-values for id 6730.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8015526	8077042	NM_002972	SBF1	0.625821	9.455125e-13	1.638289e-8	1.638289e-8
2	8015526	8072825	NM_013365	GGA1	0.615019	2.953171e-12	5.116960e-8	2.558480e-8
3	8015526	8137739	NM_001080453	INTS1	0.614788	3.024688e-12	5.240877e-8	1.746959e-8
4	8015526	7967493	NM_006312	NCOR2	0.610513	4.689551e-12	8.125586e-8	2.031396e-8
5	8015526	8170921	NM_017514	PLXNA3	0.604107	8.937366e-12	1.548577e-7	3.097155e-8
6	8015526	7960088	NM_001142641	FBRSL1	0.598633	1.533388e-11	2.656901e-7	4.428169e-8
7	8015526	8135392	NM_012257	HBP1	-0.595226	2.134622e-11	3.698660e-7	5.283799e-8
8	8015526	8167006	NM_006915	RP2	-0.591016	3.195758e-11	5.537289e-7	6.921611e-8
9	8015526	7903541	NM_007269	STXBP3	-0.585003	5.630733e-11	9.756371e-7	1.084041e-7
10	8015526	8017393	NM_030576	LIMD2	0.584697	5.793213e-11	1.003790e-6	1.003790e-7
11	8015526	8030403	NM_020719	PRR12	0.582977	6.796434e-11	1.177618e-6	1.070562e-7
12	8015526	7902771	NM_016009	SH3GLB1	-0.581299	7.935891e-11	1.375052e-6	1.145877e-7
13	8015526	7930470	NM_007373	SHOC2	-0.579797	9.109340e-11	1.578375e-6	1.214135e-7
14	8015526	7899005	NM_014313	TMEM50A	-0.577954	1.077847e-10	1.867585e-6	1.333989e-7
15	8015526	8152133	NM_015713	RRM2B	-0.577854	1.087680e-10	1.884623e-6	1.256415e-7
16	8015526	8127425	NM_018368	LMBRD1	-0.576690	1.208957e-10	2.094759e-6	1.309225e-7
17	8015526	8153568	NM_201384	PLEC	0.575469	1.350201e-10	2.339493e-6	1.376173e-7
18	8015526	7954511	NM_015000	STK38L	-0.574761	1.439222e-10	2.493740e-6	1.385411e-7
19	8015526	8131957	NM_013322	SNX10	-0.573023	1.682244e-10	2.914825e-6	1.534118e-7
20	8015526	8003357	NM_001142864	FAM38A	0.570876	2.037385e-10	3.530177e-6	1.765088e-7
21	8015526	8105463	NM_022913	GPBP1	-0.567536	2.737157e-10	4.742672e-6	2.258415e-7
22	8015526	7959500	NM_003959	HIP1R	0.566922	2.888645e-10	5.005154e-6	2.275070e-7
23	8015526	8129317	NM_020755	SERINC1	-0.566086	3.108217e-10	5.385608e-6	2.341569e-7
24	8015526	7949808	NM_004910	PITPNM1	0.565864	3.169214e-10	5.491297e-6	2.288040e-7
25	8015526	8101648	NM_016245	HSD17B11	-0.565334	3.319085e-10	5.750978e-6	2.300391e-7
26	8015526	7933877	NM_004241	JMJD1C	-0.563213	3.991402e-10	6.915902e-6	2.659962e-7
27	8015526	8032380	NM_017797	BTBD2	0.562112	4.390149e-10	7.606811e-6	2.817337e-7
28	8015526	8052680	NM_004161	RAB1A	-0.560726	4.946838e-10	8.571386e-6	3.061209e-7
29	8015526	8030525	NM_017432	PTOV1	0.559293	5.593166e-10	9.691279e-6	3.341820e-7
30	8015526	7953547	NM_001007026	ATN1	0.558822	5.822951e-10	1.008943e-5	3.363143e-7
31	8015526	8099449	NM_033535	FBXL5	-0.558819	5.824395e-10	1.009193e-5	3.255461e-7
32	8015526	7919800	NM_004079	CTSS	-0.557465	6.536898e-10	1.132648e-5	3.539526e-7
33	8015526	8166140	NM_152581	MOSPD2	-0.557195	6.688272e-10	1.158877e-5	3.511748e-7
34	8015526	8174779	NM_013995	LAMP2	-0.556698	6.976141e-10	1.208756e-5	3.555164e-7
35	8015526	7971661	hsa-mir-15a		-0.556657	7.000489e-10	1.212975e-5	3.465642e-7
36	8015526	8150757	NM_014781	RB1CC1	-0.555702	7.589880e-10	1.315098e-5	3.653051e-7
37	8015526	8049532	NM_001137550	LRRFIP1	-0.554106	8.682782e-10	1.504466e-5	4.066124e-7
38	8015526	8045514	NM_001001664	SPOPL	-0.552828	9.665326e-10	1.674711e-5	4.407134e-7
39	8015526	7934278	NM_000917	P4HA1	-0.551692	1.062814e-9	1.841538e-5	4.721893e-7
40	8015526	8166065	NM_138636	TLR8	-0.551601	1.070874e-9	1.855503e-5	4.638759e-7
41	8015526	7957277	NM_015336	ZDHHC17	-0.550869	1.138185e-9	1.972134e-5	4.810083e-7
42	8015526	8047339	NR_026584	BZW1L1	-0.549519	1.273163e-9	2.206009e-5	5.252403e-7
43	8015526	8161575	ENST00000377395		-0.549356	1.290467e-9	2.235993e-5	5.199984e-7
44	8015526	8023672	NM_004869	VPS4B	-0.548303	1.407735e-9	2.439182e-5	5.543596e-7
45	8015526	8019924	NM_006471	MYL12A	-0.547356	1.521844e-9	2.636899e-5	5.859775e-7
46	8015526	8107421	NM_001284	AP3S1	-0.546807	1.592054e-9	2.758551e-5	5.996851e-7
47	8015526	7946569	NM_016422	RNF141	-0.545740	1.737476e-9	3.010525e-5	6.405372e-7
48	8015526	7971653	NR_002612	DLEU2	-0.545585	1.759656e-9	3.048955e-5	6.351990e-7
49	8015526	8088718	NM_003968	UBA3	-0.545498	1.772237e-9	3.070756e-5	6.266849e-7
50	8015526	8113358	NM_005668	ST8SIA4	-0.545190	1.817313e-9	3.148859e-5	6.297717e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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