[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4650	8030148	NM_014475	DHDH		dihydrodiol dehydrogenase (dimeric)

Fetching correlation data, please wait...
Getting list of correlations for id 4650.
Getting list of p-values for id 4650.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8030148	8033825	NM_015719	COL5A3	0.710175	2.191487e-17	3.797190e-13	3.797190e-13
2	8030148	8044634	NM_012184	FOXD4L1	0.696097	1.678993e-16	2.909191e-12	1.454596e-12
3	8030148	8105714	NM_139168	SFRS12	-0.694891	1.988086e-16	3.444757e-12	1.148252e-12
4	8030148	8138670	NM_031243	HNRNPA2B1	-0.690933	3.442137e-16	5.964191e-12	1.491048e-12
5	8030148	8161533	NM_001085476	FOXD4L6	0.687734	5.329821e-16	9.234981e-12	1.846996e-12
6	8030148	8085815	NM_001068	TOP2B	-0.686508	6.292891e-16	1.090369e-11	1.817282e-12
7	8030148	8050565	NM_015317	PUM2	-0.685412	7.295132e-16	1.264027e-11	1.805754e-12
8	8030148	8079021	NM_001904	CTNNB1	-0.682627	1.058984e-15	1.834901e-11	2.293626e-12
9	8030148	8100714	NM_001031732	YTHDC1	-0.678735	1.770564e-15	3.067857e-11	3.408730e-12
10	8030148	7908978	NM_014827	ZC3H11A	-0.678238	1.889623e-15	3.274150e-11	3.274150e-12
11	8030148	8016320	NM_203400	RPRML	0.678185	1.902770e-15	3.296930e-11	2.997209e-12
12	8030148	8074991	NM_001099781	GGT5	0.677204	2.162609e-15	3.747153e-11	3.122628e-12
13	8030148	8151149	NM_006421	ARFGEF1	-0.677115	2.187817e-15	3.790830e-11	2.916023e-12
14	8030148	8155661	NM_199135	FOXD4L3	0.676770	2.288116e-15	3.964619e-11	2.831871e-12
15	8030148	8067506	BC137326	C20orf151	0.676641	2.326763e-15	4.031582e-11	2.687721e-12
16	8030148	8070867	ENST00000416043		0.675772	2.604685e-15	4.513138e-11	2.820711e-12
17	8030148	7997582	NM_021197	WFDC1	0.675326	2.759313e-15	4.781061e-11	2.812389e-12
18	8030148	8030292	NM_014419	DKKL1	0.674832	2.941126e-15	5.096090e-11	2.831161e-12
19	8030148	8035646	NM_023002	HAPLN4	0.674114	3.226193e-15	5.590024e-11	2.942118e-12
20	8030148	7961767	AK295862	KIAA0528	-0.673243	3.608597e-15	6.252615e-11	3.126308e-12
21	8030148	8093997	NM_020777	SORCS2	0.673135	3.658646e-15	6.339336e-11	3.018732e-12
22	8030148	7903239	NM_000028	AGL	-0.672621	3.907863e-15	6.771155e-11	3.077798e-12
23	8030148	8150491	NM_001099412	MYST3	-0.671657	4.419434e-15	7.657553e-11	3.329371e-12
24	8030148	8097867	NM_015196	KIAA0922	-0.669467	5.836216e-15	1.011241e-10	4.213505e-12
25	8030148	8083429	NM_021038	MBNL1	-0.669053	6.149251e-15	1.065481e-10	4.261923e-12
26	8030148	8044263	NM_006267	RANBP2	-0.668950	6.229678e-15	1.079416e-10	4.151601e-12
27	8030148	7965048	NM_004537	NAP1L1	-0.668928	6.247151e-15	1.082444e-10	4.009051e-12
28	8030148	7979367	NM_006544	EXOC5	-0.668395	6.680536e-15	1.157536e-10	4.134059e-12
29	8030148	8170753	NM_014370	SRPK3	0.668200	6.847157e-15	1.186407e-10	4.091058e-12
30	8030148	8151842	NM_015496	KIAA1429	-0.667244	7.720153e-15	1.337671e-10	4.458903e-12
31	8030148	7916562	NM_002136	HNRNPA1	-0.666765	8.197491e-15	1.420379e-10	4.581869e-12
32	8030148	8107066	NM_005575	LNPEP	-0.666707	8.256728e-15	1.430643e-10	4.470760e-12
33	8030148	7951497	NM_002519	NPAT	-0.665927	9.101504e-15	1.577018e-10	4.778841e-12
34	8030148	8003719	NM_001098202	HIC1	0.665030	1.017706e-14	1.763379e-10	5.186408e-12
35	8030148	8045381	NM_058241	CCNT2	-0.665025	1.018312e-14	1.764430e-10	5.041228e-12
36	8030148	8159808	NM_207305	FOXD4	0.664860	1.039400e-14	1.800968e-10	5.002689e-12
37	8030148	7985159	NM_004378	CRABP1	0.664822	1.044298e-14	1.809456e-10	4.890420e-12
38	8030148	8047557			0.664286	1.116095e-14	1.933857e-10	5.089097e-12
39	8030148	7987869	NM_015497	TMEM87A	-0.664127	1.138303e-14	1.972338e-10	5.057278e-12
40	8030148	7947991	NM_015231	NUP160	-0.663608	1.213684e-14	2.102950e-10	5.257375e-12
41	8030148	8113157	NM_014639	TTC37	-0.662657	1.364804e-14	2.364797e-10	5.767797e-12
42	8030148	8078360	NM_178862	STT3B	-0.661899	1.498156e-14	2.595854e-10	6.180605e-12
43	8030148	8092888	NM_138399	TMEM44	0.661476	1.577856e-14	2.733951e-10	6.358026e-12
44	8030148	8116195	NM_173465	COL23A1	0.660574	1.762097e-14	3.053186e-10	6.939060e-12
45	8030148	8107234	NM_002372	MAN2A1	-0.658757	2.198294e-14	3.808984e-10	8.464408e-12
46	8030148	8073104	NM_004711	SYNGR1	0.657806	2.466777e-14	4.274185e-10	9.291707e-12
47	8030148	7930454	NM_145341	PDCD4	-0.657217	2.648601e-14	4.589231e-10	9.764321e-12
48	8030148	8078619	NM_002207	ITGA9	0.657184	2.659219e-14	4.607629e-10	9.599227e-12
49	8030148	7932860			0.657043	2.704593e-14	4.686248e-10	9.563772e-12
50	8030148	8095269	NM_000938	POLR2B	-0.656845	2.770034e-14	4.799638e-10	9.599275e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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