[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5374	8015572	NM_001524	HCRT		hypocretin (orexin) neuropeptide precursor

Fetching correlation data, please wait...
Getting list of correlations for id 5374.
Getting list of p-values for id 5374.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8015572	8174469	NM_012282	KCNE1L	0.769468	8.912543e-22	1.544276e-17	1.544276e-17
2	8015572	8075126	NM_002430	MN1	0.768210	1.139080e-21	1.973684e-17	9.868422e-18
3	8015572	8153346	NM_023946	LYNX1	0.758998	6.552986e-21	1.135436e-16	3.784786e-17
4	8015572	7936882	NM_001146340	NKX1-2	0.758763	6.845749e-21	1.186163e-16	2.965407e-17
5	8015572	8085195	NM_198560	LHFPL4	0.758037	7.830072e-21	1.356717e-16	2.713433e-17
6	8015572	7992460	NM_001099456	NPW	0.753647	1.747669e-20	3.028186e-16	5.046977e-17
7	8015572	8074558	NM_023004	RTN4R	0.753061	1.942781e-20	3.366257e-16	4.808938e-17
8	8015572	8086391	NM_000729	CCK	0.752013	2.346411e-20	4.065626e-16	5.082033e-17
9	8015572	8013112	NM_016084	RASD1	0.750164	3.265175e-20	5.657569e-16	6.286188e-17
10	8015572	7991296	NM_198525	KIF7	0.750148	3.274921e-20	5.674456e-16	5.674456e-17
11	8015572	7940022	NM_178570	RTN4RL2	0.749552	3.640508e-20	6.307909e-16	5.734462e-17
12	8015572	8064242	NR_027686	NCRNA00176	0.748892	4.092587e-20	7.091225e-16	5.909354e-17
13	8015572	8093440	NM_001004356	FGFRL1	0.747799	4.963512e-20	8.600278e-16	6.615598e-17
14	8015572	7937560	NM_002457	MUC2	0.747335	5.385377e-20	9.331243e-16	6.665174e-17
15	8015572	8053142	NM_033046	RTKN	0.745745	7.112005e-20	1.232297e-15	8.215314e-17
16	8015572	7946354	NM_002315	LMO1	0.743786	9.993253e-20	1.731531e-15	1.082207e-16
17	8015572	8074131	NM_001080420	SHANK3	0.743516	1.046987e-19	1.814115e-15	1.067126e-16
18	8015572	8087116	NM_001008269	TMEM89	0.741236	1.548447e-19	2.682994e-15	1.490552e-16
19	8015572	7906496	NM_004983	KCNJ9	0.740614	1.721690e-19	2.983172e-15	1.570091e-16
20	8015572	7985080	NM_145805	ISL2	0.740278	1.823092e-19	3.158872e-15	1.579436e-16
21	8015572	7920744	NM_000298	PKLR	0.738495	2.465502e-19	4.271976e-15	2.034274e-16
22	8015572	8030015	NM_012451	SYNGR4	0.737725	2.806614e-19	4.863019e-15	2.210463e-16
23	8015572	8049682	hsa-mir-149		0.737555	2.887862e-19	5.003799e-15	2.175565e-16
24	8015572	8015187	NM_030967	KRTAP1-1	0.737020	3.158780e-19	5.473217e-15	2.280507e-16
25	8015572	8155942	NM_001013735	FOXB2	0.736599	3.389494e-19	5.872976e-15	2.349191e-16
26	8015572	8138757	NM_018951	HOXA10	0.736248	3.594284e-19	6.227816e-15	2.395314e-16
27	8015572	8049567	NM_005855	RAMP1	0.735197	4.281254e-19	7.418129e-15	2.747455e-16
28	8015572	8137537	NM_001427	EN2	0.734924	4.480376e-19	7.763147e-15	2.772552e-16
29	8015572	8000467	NM_001109763	GSG1L	0.734800	4.573291e-19	7.924142e-15	2.732463e-16
30	8015572	7945550	NM_018494	LRDD	0.734639	4.697258e-19	8.138939e-15	2.712980e-16
31	8015572	7911435	NM_001014980	FAM132A	0.734154	5.089879e-19	8.819234e-15	2.844914e-16
32	8015572	8074892	NR_003950	ZDHHC8P1	0.733148	6.008566e-19	1.041104e-14	3.253451e-16
33	8015572	7950921	NM_001143831	GRM5	0.733131	6.025456e-19	1.044031e-14	3.163730e-16
34	8015572	8033462	NM_206833	CTXN1	0.732872	6.287726e-19	1.089474e-14	3.204336e-16
35	8015572	8009705	NM_178160	OTOP2	0.731506	7.865524e-19	1.362859e-14	3.893884e-16
36	8015572	8067409	NM_005560	LAMA5	0.731273	8.170034e-19	1.415622e-14	3.932283e-16
37	8015572	7992463	NM_001130012	SLC9A3R2	0.730868	8.728177e-19	1.512331e-14	4.087382e-16
38	8015572	8103622	NM_032783	CBR4	-0.729004	1.181003e-18	2.046325e-14	5.385065e-16
39	8015572	8023984	NM_001194	HCN2	0.728618	1.256849e-18	2.177742e-14	5.583955e-16
40	8015572	8164853	NM_020469	ABO	0.728416	1.298555e-18	2.250007e-14	5.625017e-16
41	8015572	8153380	NM_001135655	LY6H	0.728302	1.322553e-18	2.291587e-14	5.589237e-16
42	8015572	7947928	NM_031909	C1QTNF4	0.728169	1.351324e-18	2.341439e-14	5.574854e-16
43	8015572	8052018	NM_022055	KCNK12	0.728082	1.370276e-18	2.374277e-14	5.521576e-16
44	8015572	8076007	NM_025045	BAIAP2L2	0.727692	1.459036e-18	2.528072e-14	5.745619e-16
45	8015572	7912004	NM_207370	GPR153	0.727447	1.517411e-18	2.629217e-14	5.842706e-16
46	8015572	8131056	NM_017781	CYP2W1	0.726990	1.632968e-18	2.829443e-14	6.150963e-16
47	8015572	8076169	NM_014293	NPTXR	0.726475	1.773042e-18	3.072150e-14	6.536489e-16
48	8015572	8032034	NM_001136263	C2CD4C	0.725919	1.937470e-18	3.357055e-14	6.993864e-16
49	8015572	8092520	BC137178	C3orf70	0.725908	1.941073e-18	3.363298e-14	6.863873e-16
50	8015572	8021963	NM_001071	TYMS	0.725133	2.195869e-18	3.804782e-14	7.609564e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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