[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1434	8087611	NM_007312	HYAL1		hyaluronoglucosaminidase 1

Fetching correlation data, please wait...
Getting list of correlations for id 1434.
Getting list of p-values for id 1434.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8087611	7942123	NM_053056	CCND1	0.805438	3.861130e-25	6.690179e-21	6.690179e-21
2	8087611	8155942	NM_001013735	FOXB2	0.793926	5.437495e-24	9.421547e-20	4.710774e-20
3	8087611	8013384	NM_000691	ALDH3A1	0.789051	1.585308e-23	2.746864e-19	9.156212e-20
4	8087611	8137228	NM_173680	ZNF775	0.788078	1.955833e-23	3.388871e-19	8.472178e-20
5	8087611	7896865	NM_153254	TTLL10	0.787766	2.091889e-23	3.624617e-19	7.249233e-20
6	8087611	7977216	NM_015656	KIF26A	0.787015	2.457747e-23	4.258537e-19	7.097562e-20
7	8087611	8001014	NM_173502	PRSS36	0.784643	4.072077e-23	7.055689e-19	1.007956e-19
8	8087611	7935983	NM_005029	PITX3	0.784484	4.211394e-23	7.297083e-19	9.121354e-20
9	8087611	7920744	NM_000298	PKLR	0.782877	5.906647e-23	1.023445e-18	1.137161e-19
10	8087611	8119435	NM_004828	NCR2	0.780503	9.683286e-23	1.677823e-18	1.677823e-19
11	8087611	8165538	NM_001033113	ENTPD8	0.777095	1.947886e-22	3.375101e-18	3.068274e-19
12	8087611	8031157	NM_020659	TTYH1	0.776266	2.304930e-22	3.993752e-18	3.328126e-19
13	8087611	7994052	NM_006043	HS3ST2	0.774659	3.186527e-22	5.521296e-18	4.247151e-19
14	8087611	8142971	NM_138693	KLF14	0.773792	3.791123e-22	6.568879e-18	4.692057e-19
15	8087611	8085195	NM_198560	LHFPL4	0.771563	5.904795e-22	1.023124e-17	6.820826e-19
16	8087611	8067409	NM_005560	LAMA5	0.771428	6.064252e-22	1.050753e-17	6.567206e-19
17	8087611	7911435	NM_001014980	FAM132A	0.771346	6.162527e-22	1.067781e-17	6.281066e-19
18	8087611	7927099	NR_026827	LOC84856	0.771273	6.252625e-22	1.083392e-17	6.018846e-19
19	8087611	7937560	NM_002457	MUC2	0.770608	7.127668e-22	1.235011e-17	6.500058e-19
20	8087611	8153838	NM_004260	RECQL4	0.770014	8.009028e-22	1.387724e-17	6.938622e-19
21	8087611	8075365	NM_001017981	RNF215	0.769939	8.127293e-22	1.408216e-17	6.705791e-19
22	8087611	7953150	NM_003213	TEAD4	0.769610	8.668919e-22	1.502064e-17	6.827561e-19
23	8087611	8115691	NM_003062	SLIT3	0.768589	1.058094e-21	1.833359e-17	7.971126e-19
24	8087611	8000467	NM_001109763	GSG1L	0.768215	1.137967e-21	1.971755e-17	8.215645e-19
25	8087611	8060134	NM_004321	KIF1A	0.767870	1.216817e-21	2.108379e-17	8.433516e-19
26	8087611	7912520	NM_002521	NPPB	0.767785	1.236960e-21	2.143281e-17	8.243387e-19
27	8087611	7991939	NM_145294	WDR90	0.766623	1.548482e-21	2.683056e-17	9.937243e-19
28	8087611	7971150	NM_005780	LHFP	0.766239	1.667318e-21	2.888961e-17	1.031772e-18
29	8087611	7945550	NM_018494	LRDD	0.765887	1.784212e-21	3.091505e-17	1.066036e-18
30	8087611	8064686	NM_025220	ADAM33	0.765100	2.074626e-21	3.594704e-17	1.198235e-18
31	8087611	8125383	NM_004557	NOTCH4	0.764813	2.191643e-21	3.797461e-17	1.224987e-18
32	8087611	8151609	NM_172239	REXO1L1	0.764315	2.410117e-21	4.176010e-17	1.305003e-18
33	8087611	8106976	NM_199243	GPR150	0.764225	2.451743e-21	4.248134e-17	1.287313e-18
34	8087611	8008228	NM_138281	DLX4	0.763657	2.731868e-21	4.733508e-17	1.392208e-18
35	8087611	8076007	NM_025045	BAIAP2L2	0.763630	2.745850e-21	4.757735e-17	1.359353e-18
36	8087611	8019170	BC108932	C17orf55	0.763068	3.054616e-21	5.292732e-17	1.470203e-18
37	8087611	8032465	NM_144616	JSRP1	0.762844	3.186983e-21	5.522085e-17	1.492456e-18
38	8087611	8064242	NR_027686	NCRNA00176	0.762457	3.428660e-21	5.940839e-17	1.563379e-18
39	8087611	7936882	NM_001146340	NKX1-2	0.762123	3.652094e-21	6.327984e-17	1.622560e-18
40	8087611	8172317	NM_006950	SYN1	0.761734	3.929455e-21	6.808566e-17	1.702142e-18
41	8087611	7921936	NM_177398	LMX1A	0.761622	4.013520e-21	6.954227e-17	1.696153e-18
42	8087611	8172580	NM_005183	CACNA1F	0.761404	4.181451e-21	7.245201e-17	1.725048e-18
43	8087611	8076865	NM_001001694	IL17REL	0.761243	4.309785e-21	7.467564e-17	1.736643e-18
44	8087611	8038890	NM_001523	HAS1	0.761092	4.433560e-21	7.682029e-17	1.745916e-18
45	8087611	8013112	NM_016084	RASD1	0.760624	4.839732e-21	8.385804e-17	1.863512e-18
46	8087611	7998634	NM_001009606	HS3ST6	0.759239	6.266840e-21	1.085855e-16	2.360555e-18
47	8087611	7896761	NM_152486	SAMD11	0.759226	6.282070e-21	1.088494e-16	2.315945e-18
48	8087611	8021199	NM_002747	MAPK4	0.758842	6.745858e-21	1.168855e-16	2.435114e-18
49	8087611	7897991	NM_001012277	PRAMEF7	0.758680	6.951029e-21	1.204405e-16	2.457969e-18
50	8087611	7912591	NM_001012277	PRAMEF7	0.758680	6.951029e-21	1.204405e-16	2.408810e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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