[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4882	8089714	NM_002338	LSAMP		limbic system-associated membrane protein

Fetching correlation data, please wait...
Getting list of correlations for id 4882.
Getting list of p-values for id 4882.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8089714	8131056	NM_017781	CYP2W1	0.842336	2.075172e-29	3.595650e-25	3.595650e-25
2	8089714	8159036	NM_139025	ADAMTS13	0.813452	5.505985e-26	9.540220e-22	4.770110e-22
3	8089714	8039362	NM_178837	C19orf51	0.793626	5.813309e-24	1.007272e-19	3.357573e-20
4	8089714	7937560	NM_002457	MUC2	0.792665	7.190985e-24	1.245982e-19	3.114955e-20
5	8089714	8121209	NM_005604	POU3F2	0.789163	1.547113e-23	2.680683e-19	5.361367e-20
6	8089714	8070933	NM_006657	FTCD	0.789014	1.598156e-23	2.769125e-19	4.615208e-20
7	8089714	8115691	NM_003062	SLIT3	0.788797	1.674844e-23	2.902001e-19	4.145716e-20
8	8089714	8032312	NM_138813	ATP8B3	0.785890	3.125506e-23	5.415564e-19	6.769455e-20
9	8089714	8086051	NM_015551	SUSD5	0.782787	6.018488e-23	1.042823e-18	1.158693e-19
10	8089714	8049942	NM_080741	NEU4	0.782017	7.069331e-23	1.224903e-18	1.224903e-19
11	8089714	7968265	NM_000209	PDX1	0.780427	9.837122e-23	1.704478e-18	1.549526e-19
12	8089714	8114550	NM_004883	NRG2	0.780395	9.902340e-23	1.715778e-18	1.429815e-19
13	8089714	8137330	ENST00000356058		0.777808	1.684527e-22	2.918780e-18	2.245215e-19
14	8089714	7992758	NM_172229	KREMEN2	0.775200	2.858082e-22	4.952199e-18	3.537285e-19
15	8089714	8034643	NM_001127221	CACNA1A	0.774183	3.505450e-22	6.073893e-18	4.049262e-19
16	8089714	8007259	ENST00000225928		0.774109	3.558230e-22	6.165346e-18	3.853341e-19
17	8089714	8028600	NM_001001414	NCCRP1	0.772566	4.840509e-22	8.387151e-18	4.933618e-19
18	8089714	7952893	BC024764	IQSEC3	0.771956	5.462265e-22	9.464467e-18	5.258037e-19
19	8089714	7949843	NM_016366	CABP2	0.771955	5.463808e-22	9.467139e-18	4.982705e-19
20	8089714	7923360	NM_003281	TNNI1	0.770653	7.064772e-22	1.224113e-17	6.120565e-19
21	8089714	7903632	NM_001408	CELSR2	0.770090	7.890475e-22	1.367183e-17	6.510393e-19
22	8089714	7928064	NM_145306	C10orf35	0.769858	8.258445e-22	1.430941e-17	6.504276e-19
23	8089714	8006865	NM_032192	PPP1R1B	0.769694	8.527979e-22	1.477643e-17	6.424534e-19
24	8089714	8107530	ENST00000365222		0.769420	8.996811e-22	1.558878e-17	6.495323e-19
25	8089714	8060660	NM_052970	HSPA12B	0.769375	9.076488e-22	1.572683e-17	6.290732e-19
26	8089714	7992845	NM_003456	ZNF205	0.769165	9.457642e-22	1.638726e-17	6.302791e-19
27	8089714	8021199	NM_002747	MAPK4	0.769025	9.718739e-22	1.683966e-17	6.236911e-19
28	8089714	7976669	NM_001127258	HHIPL1	0.768879	9.998683e-22	1.732472e-17	6.187400e-19
29	8089714	8073449	NM_014460	CSDC2	0.768716	1.032248e-21	1.788576e-17	6.167503e-19
30	8089714	7945418	ENST00000410806		0.768677	1.040129e-21	1.802232e-17	6.007440e-19
31	8089714	8010237	ENST00000340363		0.767709	1.255240e-21	2.174954e-17	7.015980e-19
32	8089714	8046922	NM_000090	COL3A1	0.767438	1.323101e-21	2.292537e-17	7.164180e-19
33	8089714	8049670	NM_002081	GPC1	0.767305	1.357507e-21	2.352152e-17	7.127733e-19
34	8089714	8093440	NM_001004356	FGFRL1	0.767218	1.380617e-21	2.392195e-17	7.035867e-19
35	8089714	8006063	NM_152345	ANKRD13B	0.766735	1.515364e-21	2.625671e-17	7.501916e-19
36	8089714	8024373	NM_001039846	IZUMO4	0.766668	1.535225e-21	2.660085e-17	7.389125e-19
37	8089714	8028407	NM_000540	RYR1	0.765239	2.020255e-21	3.500496e-17	9.460800e-19
38	8089714	8164562	NM_199350	C9orf50	0.764775	2.207644e-21	3.825184e-17	1.006627e-18
39	8089714	8067409	NM_005560	LAMA5	0.764283	2.424988e-21	4.201777e-17	1.077379e-18
40	8089714	8035639	NM_023002	HAPLN4	0.763878	2.619125e-21	4.538158e-17	1.134539e-18
41	8089714	7991939	NM_145294	WDR90	0.763660	2.730193e-21	4.730605e-17	1.153806e-18
42	8089714	7921773	NM_030916	PVRL4	0.763298	2.924362e-21	5.067043e-17	1.206439e-18
43	8089714	8131096	NM_001128636	ELFN1	0.762526	3.384618e-21	5.864528e-17	1.363844e-18
44	8089714	8059748	NM_004826	ECEL1	0.762018	3.725084e-21	6.454452e-17	1.466921e-18
45	8089714	8027556	NM_002333	LRP3	0.761962	3.764256e-21	6.522326e-17	1.449406e-18
46	8089714	7927307	NM_001630	ANXA8L2	0.761763	3.908149e-21	6.771651e-17	1.472098e-18
47	8089714	8024306	NM_005883	APC2	0.761164	4.373704e-21	7.578316e-17	1.612408e-18
48	8089714	8126484			0.761107	4.421038e-21	7.660332e-17	1.595903e-18
49	8089714	8065334	NM_002509	NKX2-2	0.760817	4.668310e-21	8.088781e-17	1.650772e-18
50	8089714	8049952	NM_173821	C2orf85	0.760482	4.969797e-21	8.611168e-17	1.722234e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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