[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7436	8075126	NM_002430	MN1		meningioma (disrupted in balanced translocation) 1

Fetching correlation data, please wait...
Getting list of correlations for id 7436.
Getting list of p-values for id 7436.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8075126	7977432	NM_025268	TMEM121	0.846356	6.109830e-30	1.058650e-25	1.058650e-25
2	8075126	8067409	NM_005560	LAMA5	0.838520	6.418711e-29	1.112170e-24	5.560850e-25
3	8075126	8001449	NM_024336	IRX3	0.837543	8.530045e-29	1.478001e-24	4.926670e-25
4	8075126	8131087	NM_001080461	UNCX	0.836237	1.243864e-28	2.155243e-24	5.388107e-25
5	8075126	8005328	NM_016239	MYO15A	0.836175	1.266401e-28	2.194292e-24	4.388585e-25
6	8075126	8046276	NM_001003845	SP5	0.836036	1.318031e-28	2.283753e-24	3.806255e-25
7	8075126	8159670	NM_006647	NOXA1	0.835917	1.363910e-28	2.363248e-24	3.376068e-25
8	8075126	7936882	NM_001146340	NKX1-2	0.832541	3.554312e-28	6.158556e-24	7.698194e-25
9	8075126	7899284	NM_001013642	TRNP1	0.832287	3.817048e-28	6.613800e-24	7.348667e-25
10	8075126	7911435	NM_001014980	FAM132A	0.830605	6.098813e-28	1.056741e-23	1.056741e-24
11	8075126	7992147	NM_021098	CACNA1H	0.829457	8.373097e-28	1.450807e-23	1.318915e-24
12	8075126	8076169	NM_014293	NPTXR	0.829054	9.351689e-28	1.620367e-23	1.350306e-24
13	8075126	8137330	ENST00000356058		0.827683	1.359910e-27	2.356317e-23	1.812551e-24
14	8075126	7937560	NM_002457	MUC2	0.826171	2.047378e-27	3.547492e-23	2.533923e-24
15	8075126	7947928	NM_031909	C1QTNF4	0.825312	2.578166e-27	4.467188e-23	2.978126e-24
16	8075126	7911750	NM_001010926	HES5	0.824267	3.407906e-27	5.904879e-23	3.690549e-24
17	8075126	8074063	NM_024866	ADM2	0.819529	1.179824e-26	2.044281e-22	1.202518e-23
18	8075126	7945162	NM_003658	BARX2	0.818576	1.507643e-26	2.612294e-22	1.451274e-23
19	8075126	8073449	NM_014460	CSDC2	0.818376	1.587262e-26	2.750248e-22	1.447499e-23
20	8075126	7991939	NM_145294	WDR90	0.818231	1.647301e-26	2.854279e-22	1.427140e-23
21	8075126	7946354	NM_002315	LMO1	0.817024	2.241904e-26	3.884548e-22	1.849785e-23
22	8075126	8074131	NM_001080420	SHANK3	0.816383	2.637586e-26	4.570145e-22	2.077339e-23
23	8075126	8006063	NM_152345	ANKRD13B	0.816029	2.884973e-26	4.998792e-22	2.173388e-23
24	8075126	8125383	NM_004557	NOTCH4	0.815295	3.471218e-26	6.014579e-22	2.506075e-23
25	8075126	8087951	NM_018165	PBRM1	-0.814873	3.859761e-26	6.687808e-22	2.675123e-23
26	8075126	7955112	NM_181788	H1FNT	0.814670	4.061499e-26	7.037360e-22	2.706677e-23
27	8075126	7912004	NM_207370	GPR153	0.814010	4.790894e-26	8.301182e-22	3.074512e-23
28	8075126	8027222	NM_153221	CILP2	0.813302	5.714711e-26	9.901880e-22	3.536386e-23
29	8075126	8098512	NM_021942	C4orf41	-0.811838	8.212536e-26	1.422986e-21	4.906848e-23
30	8075126	8159036	NM_139025	ADAMTS13	0.811584	8.741751e-26	1.514683e-21	5.048944e-23
31	8075126	8004842	NM_173728	ARHGEF15	0.811091	9.868640e-26	1.709939e-21	5.515933e-23
32	8075126	7930482	NM_000681	ADRA2A	0.810353	1.182308e-25	2.048584e-21	6.401826e-23
33	8075126	8166500	NM_003410	ZFX	-0.810275	1.205034e-25	2.087962e-21	6.327158e-23
34	8075126	7974771	NM_022495	C14orf135	-0.810236	1.216467e-25	2.107773e-21	6.199331e-23
35	8075126	8028407	NM_000540	RYR1	0.810027	1.280131e-25	2.218083e-21	6.337379e-23
36	8075126	7967420	NM_018183	SBNO1	-0.809664	1.398566e-25	2.423296e-21	6.731377e-23
37	8075126	7949080	NM_015080	NRXN2	0.809343	1.511757e-25	2.619421e-21	7.079515e-23
38	8075126	8045381	NM_058241	CCNT2	-0.808991	1.646859e-25	2.853513e-21	7.509245e-23
39	8075126	8098721	ENST00000362702		0.807772	2.210262e-25	3.829721e-21	9.819797e-23
40	8075126	7992460	NM_001099456	NPW	0.807697	2.250786e-25	3.899936e-21	9.749840e-23
41	8075126	8035249	NM_005234	NR2F6	0.807535	2.339796e-25	4.054165e-21	9.888206e-23
42	8075126	8131056	NM_017781	CYP2W1	0.806248	3.184646e-25	5.518036e-21	1.313818e-22
43	8075126	8053022	NM_001965	EGR4	0.805708	3.621384e-25	6.274772e-21	1.459249e-22
44	8075126	8091048	NR_023350	COPB2	-0.805679	3.645987e-25	6.317402e-21	1.435773e-22
45	8075126	8048460	NM_003936	CDK5R2	0.805357	3.936417e-25	6.820630e-21	1.515696e-22
46	8075126	8006377	NM_001098507	ZNF207	-0.805032	4.251790e-25	7.367076e-21	1.601538e-22
47	8075126	8064242	NR_027686	NCRNA00176	0.804884	4.402997e-25	7.629074e-21	1.623207e-22
48	8075126	7930956	NM_007190	SEC23IP	-0.804846	4.443132e-25	7.698614e-21	1.603878e-22
49	8075126	8086391	NM_000729	CCK	0.804729	4.567546e-25	7.914186e-21	1.615140e-22
50	8075126	7992049	NM_207112	HAGHL	0.804423	4.909344e-25	8.506421e-21	1.701284e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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