[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5455	8093386	NM_002477	MYL5		myosin, light chain 5, regulatory

Fetching correlation data, please wait...
Getting list of correlations for id 5455.
Getting list of p-values for id 5455.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8093386	8086810	NM_003074	SMARCC1	-0.783097	5.639543e-23	9.771637e-19	9.771637e-19
2	8093386	8067011	NM_015339	ADNP	-0.763530	2.798367e-21	4.848731e-17	2.424365e-17
3	8093386	8079021	NM_001904	CTNNB1	-0.760256	5.184741e-21	8.983601e-17	2.994534e-17
4	8093386	7947991	NM_015231	NUP160	-0.755479	1.252764e-20	2.170664e-16	5.426659e-17
5	8093386	8070933	NM_006657	FTCD	0.754470	1.505505e-20	2.608588e-16	5.217176e-17
6	8093386	8042119	NM_022894	PAPOLG	-0.752678	2.081776e-20	3.607094e-16	6.011823e-17
7	8093386	7948643	NM_013401	RAB3IL1	0.746777	5.938916e-20	1.029036e-15	1.470051e-16
8	8093386	8136065	NR_002144	LOC407835	0.745953	6.859546e-20	1.188554e-15	1.485692e-16
9	8093386	8090639	NM_014602	PIK3R4	-0.741977	1.364096e-19	2.363570e-15	2.626188e-16
10	8093386	7981566	NM_177533	NUDT14	0.739883	1.949435e-19	3.377786e-15	3.377786e-16
11	8093386	7983663	NM_005154	USP8	-0.738340	2.530731e-19	4.384998e-15	3.986362e-16
12	8093386	8010719	NM_144999	LRRC45	0.731078	8.434028e-19	1.461364e-14	1.217803e-15
13	8093386	8164328	NM_173492	PIP5KL1	0.728710	1.238470e-18	2.145897e-14	1.650690e-15
14	8093386	7977418	NM_001134875	C14orf80	0.728204	1.343543e-18	2.327956e-14	1.662826e-15
15	8093386	8107066	NM_005575	LNPEP	-0.728139	1.357698e-18	2.352484e-14	1.568323e-15
16	8093386	7929315	NM_183374	CYP26C1	0.727927	1.404939e-18	2.434338e-14	1.521461e-15
17	8093386	8100714	NM_001031732	YTHDC1	-0.726938	1.646445e-18	2.852795e-14	1.678115e-15
18	8093386	8044263	NM_006267	RANBP2	-0.725107	2.204719e-18	3.820116e-14	2.122287e-15
19	8093386	7976783	NM_003836	DLK1	0.724932	2.266932e-18	3.927913e-14	2.067323e-15
20	8093386	8156167	NM_024635	NAA35	-0.723211	2.975670e-18	5.155944e-14	2.577972e-15
21	8093386	8089299	NM_001777	CD47	-0.721946	3.630194e-18	6.290037e-14	2.995256e-15
22	8093386	8100902	NM_032217	ANKRD17	-0.721610	3.825856e-18	6.629061e-14	3.013210e-15
23	8093386	7908978	NM_014827	ZC3H11A	-0.721460	3.916557e-18	6.786219e-14	2.950530e-15
24	8093386	7965359	NM_001001323	ATP2B1	-0.721298	4.016939e-18	6.960150e-14	2.900063e-15
25	8093386	8054092	NM_015348	TMEM131	-0.719372	5.419992e-18	9.391221e-14	3.756488e-15
26	8093386	8109179	NM_133263	PPARGC1B	0.719320	5.464356e-18	9.468090e-14	3.641573e-15
27	8093386	8084219	NM_017644	KLHL24	-0.718804	5.918556e-18	1.025508e-13	3.798179e-15
28	8093386	8064031	NM_139317	BIRC7	0.717603	7.121502e-18	1.233943e-13	4.406938e-15
29	8093386	8043283	NM_018433	KDM3A	-0.717340	7.415407e-18	1.284868e-13	4.430578e-15
30	8093386	7998878	NM_022119	PRSS22	0.716347	8.634084e-18	1.496028e-13	4.986759e-15
31	8093386	8166956	NM_021140	KDM6A	-0.715813	9.367564e-18	1.623118e-13	5.235864e-15
32	8093386	8149612	NM_021020	LZTS1	0.715798	9.389887e-18	1.626986e-13	5.084330e-15
33	8093386	8035249	NM_005234	NR2F6	0.713967	1.240102e-17	2.148725e-13	6.511288e-15
34	8093386	7977674	NM_007192	SUPT16H	-0.713244	1.383199e-17	2.396668e-13	7.049024e-15
35	8093386	8051464	NM_019024	HEATR5B	-0.712789	1.481550e-17	2.567082e-13	7.334519e-15
36	8093386	8098512	NM_021942	C4orf41	-0.712762	1.487455e-17	2.577313e-13	7.159203e-15
37	8093386	8010012	NM_001113324	C17orf106	0.712640	1.515028e-17	2.625089e-13	7.094836e-15
38	8093386	7994052	NM_006043	HS3ST2	0.712618	1.520000e-17	2.633704e-13	6.930800e-15
39	8093386	7939434	NM_018259	TTC17	-0.712393	1.572368e-17	2.724442e-13	6.985748e-15
40	8093386	7898377	NM_014675	CROCC	0.711805	1.717665e-17	2.976199e-13	7.440496e-15
41	8093386	8153322	NM_015193	ARC	0.711705	1.743453e-17	3.020882e-13	7.368004e-15
42	8093386	8052024	NM_025133	FBXO11	-0.711439	1.814349e-17	3.143722e-13	7.485053e-15
43	8093386	7992049	NM_207112	HAGHL	0.711416	1.820554e-17	3.154474e-13	7.335987e-15
44	8093386	8170753	NM_014370	SRPK3	0.711279	1.858294e-17	3.219867e-13	7.317879e-15
45	8093386	8030721	NM_002975	CLEC11A	0.711086	1.912875e-17	3.314439e-13	7.365421e-15
46	8093386	8024655	NM_001135580	C19orf71	0.710680	2.032324e-17	3.521408e-13	7.655236e-15
47	8093386	7917156	NM_003902	FUBP1	-0.709819	2.310623e-17	4.003617e-13	8.518334e-15
48	8093386	7897890	NM_015378	VPS13D	-0.708130	2.967485e-17	5.141761e-13	1.071200e-14
49	8093386	8061324	NM_012255	XRN2	-0.707736	3.145396e-17	5.450028e-13	1.112251e-14
50	8093386	7930454	NM_145341	PDCD4	-0.707300	3.353967e-17	5.811418e-13	1.162284e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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