[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7494	7912520	NM_002521	NPPB		natriuretic peptide precursor B

Fetching correlation data, please wait...
Getting list of correlations for id 7494.
Getting list of p-values for id 7494.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7912520	7935983	NM_005029	PITX3	0.807032	2.640338e-25	4.574914e-21	4.574914e-21
2	7912520	7955184	NM_006262	PRPH	0.793340	6.193021e-24	1.073065e-19	5.365324e-20
3	7912520	7953150	NM_003213	TEAD4	0.792929	6.783310e-24	1.175344e-19	3.917814e-20
4	7912520	7936882	NM_001146340	NKX1-2	0.792187	7.990591e-24	1.384530e-19	3.461324e-20
5	7912520	8100902	NM_032217	ANKRD17	-0.791426	9.446757e-24	1.636840e-19	3.273679e-20
6	7912520	7936762	NM_001001976	ATE1	-0.789882	1.323750e-23	2.293662e-19	3.822769e-20
7	7912520	7896921	NM_152228	TAS1R3	0.787175	2.374774e-23	4.114771e-19	5.878245e-20
8	7912520	8111216	ENST00000426411		0.786687	2.636675e-23	4.568566e-19	5.710708e-20
9	7912520	8025053	NM_003811	TNFSF9	0.785456	3.427260e-23	5.938414e-19	6.598237e-20
10	7912520	8067798	NM_018419	SOX18	0.784652	4.064888e-23	7.043231e-19	7.043231e-20
11	7912520	8159670	NM_006647	NOXA1	0.784590	4.118474e-23	7.136080e-19	6.487346e-20
12	7912520	7937667	NM_003957	BRSK2	0.784566	4.139018e-23	7.171677e-19	5.976397e-20
13	7912520	8051024	NM_178553	C2orf53	0.783724	4.943688e-23	8.565928e-19	6.589175e-20
14	7912520	8133704	NM_001110199	SRRM3	0.783529	5.150300e-23	8.923925e-19	6.374232e-20
15	7912520	8097373	BC034253	C4orf29	-0.782982	5.777702e-23	1.001102e-18	6.674016e-20
16	7912520	7896798	NM_032129	PLEKHN1	0.782721	6.101633e-23	1.057230e-18	6.607687e-20
17	7912520	7950032	NM_002007	FGF4	0.781817	7.370932e-23	1.277161e-18	7.512714e-20
18	7912520	8028730	NM_182704	SELV	0.781726	7.511039e-23	1.301438e-18	7.230210e-20
19	7912520	8153876	NM_025251	ARHGAP39	0.781386	8.061417e-23	1.396802e-18	7.351588e-20
20	7912520	8049942	NM_080741	NEU4	0.779798	1.120019e-22	1.940656e-18	9.703281e-20
21	7912520	7974771	NM_022495	C14orf135	-0.779358	1.226209e-22	2.124652e-18	1.011739e-19
22	7912520	7992460	NM_001099456	NPW	0.779319	1.236081e-22	2.141757e-18	9.735260e-20
23	7912520	7945688	NR_003512	INS-IGF2	0.779246	1.254774e-22	2.174147e-18	9.452814e-20
24	7912520	7937560	NM_002457	MUC2	0.778615	1.428402e-22	2.474992e-18	1.031247e-19
25	7912520	7913450	NM_005529	HSPG2	0.778538	1.451201e-22	2.514495e-18	1.005798e-19
26	7912520	8028407	NM_000540	RYR1	0.776522	2.188500e-22	3.792013e-18	1.458467e-19
27	7912520	7930872	NM_199461	NANOS1	0.775515	2.682459e-22	4.647897e-18	1.721443e-19
28	7912520	8030448	NM_001136052	CPT1C	0.775355	2.770162e-22	4.799860e-18	1.714236e-19
29	7912520	8032465	NM_144616	JSRP1	0.775115	2.907289e-22	5.037460e-18	1.737055e-19
30	7912520	8115691	NM_003062	SLIT3	0.774688	3.168313e-22	5.489735e-18	1.829912e-19
31	7912520	8151609	NM_172239	REXO1L1	0.773692	3.867517e-22	6.701247e-18	2.161693e-19
32	7912520	8079021	NM_001904	CTNNB1	-0.773665	3.888759e-22	6.738053e-18	2.105642e-19
33	7912520	7911413	NM_003327	TNFRSF4	0.773520	4.003106e-22	6.936182e-18	2.101873e-19
34	7912520	8132660	NM_005856	RAMP3	0.773366	4.127981e-22	7.152553e-18	2.103692e-19
35	7912520	8086391	NM_000729	CCK	0.773318	4.167368e-22	7.220798e-18	2.063085e-19
36	7912520	8044933	NM_005270	GLI2	0.772390	5.012297e-22	8.684807e-18	2.412446e-19
37	7912520	8076007	NM_025045	BAIAP2L2	0.772153	5.253800e-22	9.103259e-18	2.460340e-19
38	7912520	8112121	NM_173514	SLC38A9	-0.771820	5.611725e-22	9.723436e-18	2.558799e-19
39	7912520	7928064	NM_145306	C10orf35	0.771775	5.661629e-22	9.809905e-18	2.515360e-19
40	7912520	8131087	NM_001080461	UNCX	0.770731	6.956907e-22	1.205423e-17	3.013558e-19
41	7912520	8163599	NM_015404	DFNB31	0.770040	7.968711e-22	1.380739e-17	3.367655e-19
42	7912520	7897066	NR_024445	LOC100128003	0.769625	8.643823e-22	1.497715e-17	3.565989e-19
43	7912520	7899284	NM_001013642	TRNP1	0.769587	8.708047e-22	1.508843e-17	3.508938e-19
44	7912520	8031084	NM_031895	CACNG8	0.769477	8.898057e-22	1.541766e-17	3.504014e-19
45	7912520	7922823	NM_025191	EDEM3	-0.769110	9.558978e-22	1.656284e-17	3.680631e-19
46	7912520	8038598	NM_016148	SHANK1	0.768236	1.133307e-21	1.963681e-17	4.268871e-19
47	7912520	8087611	NM_007312	HYAL1	0.767785	1.236960e-21	2.143281e-17	4.560172e-19
48	7912520	7977105	NM_152307	TRMT61A	0.767729	1.250380e-21	2.166534e-17	4.513613e-19
49	7912520	8095773	NM_003715	USO1	-0.767579	1.287289e-21	2.230486e-17	4.552013e-19
50	7912520	7911435	NM_001014980	FAM132A	0.767576	1.288023e-21	2.231758e-17	4.463515e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation