[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4671	8142019	NM_002553	ORC5L		origin recognition complex, subunit 5-like (yeast)

Fetching correlation data, please wait...
Getting list of correlations for id 4671.
Getting list of p-values for id 4671.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8142019	7913712	NM_006625	SRSF10	0.843674	1.386835e-29	2.402968e-25	2.402968e-25
2	8142019	7903281	NM_012243	SLC35A3	0.834999	1.773178e-28	3.072386e-24	1.536193e-24
3	8142019	7901418	NM_152265	BTF3L4	0.834815	1.868890e-28	3.238226e-24	1.079409e-24
4	8142019	8036813	NM_001005851	ZNF780B	0.830821	5.744138e-28	9.952868e-24	2.488217e-24
5	8142019	8114193	NM_001033503	SAR1B	0.830269	6.693494e-28	1.159782e-23	2.319563e-24
6	8142019	8105353	NM_015360	SKIV2L2	0.820264	9.753974e-27	1.690071e-22	2.816785e-23
7	8142019	8063283	NM_001316	CSE1L	0.818244	1.641658e-26	2.844501e-22	4.063573e-23
8	8142019	7902594	NM_182948	PRKACB	0.817840	1.820420e-26	3.154241e-22	3.942802e-23
9	8142019	8028186	NM_007145	ZNF146	0.817776	1.850498e-26	3.206358e-22	3.562620e-23
10	8142019	8039947	NM_006625	SRSF10	0.816332	2.672253e-26	4.630213e-22	4.630213e-23
11	8142019	7968835	NM_016248	AKAP11	0.816091	2.840195e-26	4.921206e-22	4.473823e-23
12	8142019	8046975	NM_032168	WDR75	0.814222	4.543152e-26	7.871920e-22	6.559933e-23
13	8142019	8009366	NM_015462	NOL11	0.813893	4.933341e-26	8.548000e-22	6.575384e-23
14	8142019	8051882	NM_133259	LRPPRC	0.813876	4.954012e-26	8.583816e-22	6.131297e-23
15	8142019	8040386	NM_004939	DDX1	0.813791	5.059748e-26	8.767025e-22	5.844683e-23
16	8142019	8027416	NM_003796	C19orf2	0.812969	6.208122e-26	1.075681e-21	6.723009e-23
17	8142019	8111533	NM_001007527	LMBRD2	0.812797	6.479225e-26	1.122655e-21	6.603855e-23
18	8142019	8097480	NM_057175	NAA15	0.812279	7.365350e-26	1.276194e-21	7.089968e-23
19	8142019	7947221	NM_018362	LIN7C	0.811225	9.547565e-26	1.654307e-21	8.706877e-23
20	8142019	8121161	NM_015323	KIAA0776	0.809341	1.512623e-25	2.620922e-21	1.310461e-22
21	8142019	8057719	NM_014362	HIBCH	0.808716	1.760097e-25	3.049721e-21	1.452248e-22
22	8142019	8020323	NM_003799	RNMT	0.808663	1.782613e-25	3.088733e-21	1.403969e-22
23	8142019	8155946	NM_033305	VPS13A	0.808447	1.878399e-25	3.254703e-21	1.415088e-22
24	8142019	8147156	NM_007013	WWP1	0.806677	2.874118e-25	4.979984e-21	2.074993e-22
25	8142019	7989159	NM_017661	ZNF280D	0.806661	2.885518e-25	4.999736e-21	1.999894e-22
26	8142019	7973770	NM_016106	SCFD1	0.806402	3.069081e-25	5.317797e-21	2.045306e-22
27	8142019	7916570	NM_145243	OMA1	0.805285	4.003919e-25	6.937590e-21	2.569478e-22
28	8142019	7988713	NM_017672	TRPM7	0.804332	5.015716e-25	8.690731e-21	3.103833e-22
29	8142019	8078270	NM_002948	RPL15	0.804178	5.202205e-25	9.013861e-21	3.108228e-22
30	8142019	7956910	NM_018448	CAND1	0.803681	5.846600e-25	1.013040e-20	3.376801e-22
31	8142019	7916969	NM_005455	ZRANB2	0.803129	6.655294e-25	1.153163e-20	3.719880e-22
32	8142019	8104838	NM_194283	DNAJC21	0.802639	7.463547e-25	1.293209e-20	4.041278e-22
33	8142019	8046759	NM_018981	DNAJC10	0.802487	7.732793e-25	1.339861e-20	4.060185e-22
34	8142019	8084986	NM_032288	FYTTD1	0.802133	8.398609e-25	1.455227e-20	4.280079e-22
35	8142019	8041257	NM_017964	SLC30A6	0.801971	8.721685e-25	1.511206e-20	4.317732e-22
36	8142019	7975068	NM_001123329	ZBTB1	0.801527	9.669933e-25	1.675509e-20	4.654192e-22
37	8142019	8028227	NM_152604	ZNF383	0.801167	1.051184e-24	1.821387e-20	4.922667e-22
38	8142019	7962427	NM_031292	PUS7L	0.799741	1.460473e-24	2.530562e-20	6.659373e-22
39	8142019	7969228	NM_001004127	ALG11	0.799332	1.604424e-24	2.779985e-20	7.128166e-22
40	8142019	7975224	NM_004094	EIF2S1	0.799257	1.632143e-24	2.828015e-20	7.070037e-22
41	8142019	8041149	NM_015131	WDR43	0.798360	2.003335e-24	3.471179e-20	8.466291e-22
42	8142019	7915995	NM_007051	FAF1	0.798290	2.035911e-24	3.527624e-20	8.399104e-22
43	8142019	8156718	NM_002486	NCBP1	0.798069	2.140794e-24	3.709354e-20	8.626405e-22
44	8142019	7902634	NM_025065	RPF1	0.796975	2.744101e-24	4.754704e-20	1.080614e-21
45	8142019	8088219	NM_001112736	C3orf63	0.796762	2.879271e-24	4.988912e-20	1.108647e-21
46	8142019	8174893	NM_001081550	THOC2	0.796603	2.984779e-24	5.171727e-20	1.124289e-21
47	8142019	8059319	NM_005687	FARSB	0.796427	3.105948e-24	5.381676e-20	1.145037e-21
48	8142019	7938890	NM_005788	PRMT3	0.796290	3.203012e-24	5.549859e-20	1.156221e-21
49	8142019	8083063	NM_001104647	SLC25A36	0.795727	3.635275e-24	6.298841e-20	1.285478e-21
50	8142019	8052562	NM_006430	CCT4	0.795656	3.694299e-24	6.401113e-20	1.280223e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation