[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4984	7987642	NM_016013	NDUFAF1		NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1

Fetching correlation data, please wait...
Getting list of correlations for id 4984.
Getting list of p-values for id 4984.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.167 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7987642	7984289	NM_004663	RAB11A	0.836630	1.110822e-28	1.924720e-24	1.924720e-24
2	7987642	7973902	NM_003136	SRP54	0.834325	2.148227e-28	3.722233e-24	1.861116e-24
3	7987642	8135235	NM_004279	PMPCB	0.834001	2.355348e-28	4.081112e-24	1.360371e-24
4	7987642	7932616	NM_005470	ABI1	0.833721	2.549428e-28	4.417394e-24	1.104349e-24
5	7987642	8017421	NM_020198	CCDC47	0.827651	1.371660e-27	2.376674e-23	4.753349e-24
6	7987642	7900395	NM_012421	RLF	0.827092	1.596442e-27	2.766155e-23	4.610258e-24
7	7987642	8040639	NM_000183	HADHB	0.823262	4.448492e-27	7.707902e-23	1.101129e-23
8	7987642	8088535	NM_014814	PSMD6	0.820529	9.104821e-27	1.577592e-22	1.971990e-23
9	7987642	8150797	NM_015941	ATP6V1H	0.817345	2.065812e-26	3.579433e-22	3.977148e-23
10	7987642	8152222	NM_015878	AZIN1	0.816584	2.506738e-26	4.343426e-22	4.343426e-23
11	7987642	8091048	NR_023350	COPB2	0.816505	2.557561e-26	4.431486e-22	4.028623e-23
12	7987642	8075130	NM_012399	PITPNB	0.814959	3.777380e-26	6.545067e-22	5.454222e-23
13	7987642	7918955	NM_001135589	GDAP2	0.813591	5.318849e-26	9.215969e-22	7.089207e-23
14	7987642	8128716	NM_006016	CD164	0.811667	8.564873e-26	1.484036e-21	1.060025e-22
15	7987642	7903032	NM_007358	MTF2	0.810975	1.015144e-25	1.758941e-21	1.172627e-22
16	7987642	8140814	NM_018843	SLC25A40	0.810830	1.052027e-25	1.822848e-21	1.139280e-22
17	7987642	8146564	NM_002865	RAB2A	0.808451	1.876511e-25	3.251430e-21	1.912606e-22
18	7987642	8113083	NM_032042	FAM172A	0.807873	2.157408e-25	3.738140e-21	2.076745e-22
19	7987642	8006638	NM_024835	GGNBP2	0.806935	2.701917e-25	4.681612e-21	2.464006e-22
20	7987642	7942553	NM_014752	SPCS2	0.806771	2.810304e-25	4.869414e-21	2.434707e-22
21	7987642	7974725	NM_016475	JKAMP	0.806548	2.964400e-25	5.136416e-21	2.445912e-22
22	7987642	8097704	NM_018241	TMEM184C	0.805994	3.383181e-25	5.862038e-21	2.664563e-22
23	7987642	7922250	NM_181093	SCYL3	0.804603	4.705824e-25	8.153781e-21	3.545122e-22
24	7987642	8162294	NM_006415	SPTLC1	0.803939	5.502178e-25	9.533624e-21	3.972343e-22
25	7987642	7935730	NM_018294	CWF19L1	0.803105	6.692910e-25	1.159681e-20	4.638722e-22
26	7987642	7932000	NM_012311	KIN	0.802682	7.388828e-25	1.280262e-20	4.924085e-22
27	7987642	8111533	NM_001007527	LMBRD2	0.802481	7.744674e-25	1.341920e-20	4.970073e-22
28	7987642	8135464	NM_000108	DLD	0.801556	9.603644e-25	1.664023e-20	5.942941e-22
29	7987642	8091764	NM_002268	KPNA4	0.800766	1.153408e-24	1.998510e-20	6.891415e-22
30	7987642	8095163	NM_001024924	EXOC1	0.800412	1.251661e-24	2.168753e-20	7.229178e-22
31	7987642	7976598	NM_032632	PAPOLA	0.800159	1.326780e-24	2.298911e-20	7.415842e-22
32	7987642	8055672	NM_015702	MMADHC	0.799868	1.418513e-24	2.457858e-20	7.680805e-22
33	7987642	8123767	NM_003144	SSR1	0.799606	1.506527e-24	2.610359e-20	7.910177e-22
34	7987642	8115022	NM_001025105	CSNK1A1	0.799516	1.538064e-24	2.665004e-20	7.838248e-22
35	7987642	8127637	NM_018247	TMEM30A	0.798826	1.801381e-24	3.121254e-20	8.917867e-22
36	7987642	8081667	NM_017945	SLC35A5	0.798265	2.047357e-24	3.547455e-20	9.854041e-22
37	7987642	8067017	NM_003859	DPM1	0.797753	2.300193e-24	3.985544e-20	1.077174e-21
38	7987642	7985166	NM_004136	IREB2	0.797526	2.422095e-24	4.196763e-20	1.104411e-21
39	7987642	7908421	NM_004600	TROVE2	0.797414	2.484054e-24	4.304120e-20	1.103621e-21
40	7987642	7904695	NM_004892	SEC22B	0.797266	2.568813e-24	4.450983e-20	1.112746e-21
41	7987642	8082940	NM_015396	ARMC8	0.797195	2.610941e-24	4.523977e-20	1.103409e-21
42	7987642	8016562	NM_001007230	SPOP	0.796998	2.729969e-24	4.730217e-20	1.126242e-21
43	7987642	7914180	NM_014752	SPCS2	0.796935	2.769101e-24	4.798021e-20	1.115819e-21
44	7987642	7969017	NM_000321	RB1	0.796892	2.796258e-24	4.845077e-20	1.101154e-21
45	7987642	7980463	NM_012245	SNW1	0.796333	3.171937e-24	5.496016e-20	1.221337e-21
46	7987642	8045455	NM_014607	UBXN4	0.795898	3.498863e-24	6.062479e-20	1.317930e-21
47	7987642	8081055	NM_014043	CHMP2B	0.795421	3.894173e-24	6.747434e-20	1.435624e-21
48	7987642	8089527	NM_022488	ATG3	0.795315	3.987763e-24	6.909597e-20	1.439499e-21
49	7987642	8099649	NM_001358	DHX15	0.795235	4.059668e-24	7.034186e-20	1.435548e-21
50	7987642	8021015	NM_002647	PIK3C3	0.794651	4.626624e-24	8.016551e-20	1.603310e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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