[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6491	8031522	NM_016535	ZNF581		zinc finger protein 581

Fetching correlation data, please wait...
Getting list of correlations for id 6491.
Getting list of p-values for id 6491.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8031522	7991779	NM_032039	ITFG3	0.579881	9.039750e-11	1.566318e-6	1.566318e-6
2	8031522	7947609	NM_004813	PEX16	0.575251	1.377061e-10	2.386034e-6	1.193017e-6
3	8031522	7996651	NM_001012984	C16orf86	0.566067	3.113406e-10	5.394599e-6	1.798200e-6
4	8031522	8039730	NM_023926	ZSCAN18	0.562069	4.406431e-10	7.635022e-6	1.908756e-6
5	8031522	8092682	NM_001048	SST	0.561352	4.687369e-10	8.121804e-6	1.624361e-6
6	8031522	8042558	NM_024933	ANKRD53	0.552901	9.606967e-10	1.664599e-5	2.774332e-6
7	8031522	8063417	NM_017843	BCAS4	0.551326	1.095714e-9	1.898544e-5	2.712205e-6
8	8031522	8171119	NM_004192	ASMTL	0.550406	1.182870e-9	2.049559e-5	2.561949e-6
9	8031522	7899075	NM_004455	EXTL1	0.540904	2.572275e-9	4.456981e-5	4.952201e-6
10	8031522	7977888	NM_022478	CDH24	0.538950	3.009035e-9	5.213754e-5	5.213754e-6
11	8031522	8160441	NM_058197	CDKN2A	0.537159	3.470845e-9	6.013934e-5	5.467212e-6
12	8031522	8145122	NM_001128431	SLC39A14	0.534889	4.154978e-9	7.199330e-5	5.999442e-6
13	8031522	7999304	NM_201400	FAM86A	0.533103	4.781866e-9	8.285539e-5	6.373491e-6
14	8031522	8032365	NM_031918	KLF16	0.527767	7.242614e-9	1.254928e-4	8.963769e-6
15	8031522	8092836	NM_001080513	CPN2	0.523144	1.031731e-8	1.787680e-4	1.191787e-5
16	8031522	7985786	NM_013227	ACAN	0.521168	1.198296e-8	2.076287e-4	1.297679e-5
17	8031522	8177011	NM_004192	ASMTL	0.517394	1.590591e-8	2.756017e-4	1.621186e-5
18	8031522	8130859	NM_214462	DACT2	0.516978	1.640761e-8	2.842947e-4	1.579415e-5
19	8031522	8170644	NM_001136273	ZFP92	0.516531	1.696169e-8	2.938951e-4	1.546816e-5
20	8031522	8104305	ENST00000364156		0.515140	1.880701e-8	3.258690e-4	1.629345e-5
21	8031522	8110158	NM_173664	ARL10	0.515100	1.886250e-8	3.268305e-4	1.556336e-5
22	8031522	8038347	NM_003598	TEAD2	0.515006	1.899392e-8	3.291076e-4	1.495944e-5
23	8031522	7932308	NM_001010908	C1QL3	0.513980	2.048940e-8	3.550199e-4	1.543565e-5
24	8031522	7948303	ENST00000319748		0.513394	2.139433e-8	3.706996e-4	1.544582e-5
25	8031522	8085504	NM_001080423	GRIP2	0.512703	2.250913e-8	3.900157e-4	1.560063e-5
26	8031522	7983663	NM_005154	USP8	-0.512116	2.350086e-8	4.071993e-4	1.566151e-5
27	8031522	7994463	NM_004320	ATP2A1	0.511681	2.426205e-8	4.203885e-4	1.556994e-5
28	8031522	7955184	NM_006262	PRPH	0.507858	3.204365e-8	5.552204e-4	1.982930e-5
29	8031522	7939620	NM_152312	GYLTL1B	0.507779	3.222854e-8	5.584238e-4	1.925599e-5
30	8031522	8003962	NM_002663	PLD2	0.506404	3.559043e-8	6.166753e-4	2.055584e-5
31	8031522	7897714	NM_001014765	FBXO44	0.505936	3.680880e-8	6.377860e-4	2.057374e-5
32	8031522	8032899	NM_182919	TICAM1	0.505490	3.800646e-8	6.585380e-4	2.057931e-5
33	8031522	8062064	NM_020884	MYH7B	0.505257	3.864709e-8	6.696382e-4	2.029207e-5
34	8031522	8074168	ENST00000400192		0.505097	3.909399e-8	6.773816e-4	1.992299e-5
35	8031522	8055038	NM_017980	LIMS2	0.504148	4.184179e-8	7.249927e-4	2.071408e-5
36	8031522	7992584	NM_001374	DNASE1L2	0.503755	4.303089e-8	7.455961e-4	2.071100e-5
37	8031522	8157818	NM_001045476	WDR38	0.503640	4.338836e-8	7.517902e-4	2.031865e-5
38	8031522	7951987	NM_001077263	TMPRSS13	0.503639	4.338977e-8	7.518146e-4	1.978460e-5
39	8031522	8155550	AK292642	LOC554249	0.502347	4.757182e-8	8.242769e-4	2.113531e-5
40	8031522	8162848	ENST00000443417		0.501771	4.955693e-8	8.586730e-4	2.146683e-5
41	8031522	8075310	NM_002309	LIF	0.501725	4.972039e-8	8.615052e-4	2.101232e-5
42	8031522	7996241	NM_001160305	SETD6	0.500871	5.281969e-8	9.152067e-4	2.179064e-5
43	8031522	7949898	ENST00000319373		0.498934	6.054754e-8	1.049107e-3	2.439784e-5
44	8031522	8080121	NM_015926	TEX264	0.498909	6.065574e-8	1.050982e-3	2.388595e-5
45	8031522	8008517	NM_198175	NME1	0.498835	6.097331e-8	1.056485e-3	2.347744e-5
46	8031522	7990442	NM_017793	RPP25	0.498615	6.192061e-8	1.072898e-3	2.332388e-5
47	8031522	8074061	ENST00000410149		0.498582	6.206637e-8	1.075424e-3	2.288136e-5
48	8031522	8094156	NM_000798	DRD5	0.497851	6.532922e-8	1.131959e-3	2.358249e-5
49	8031522	7997746	NM_020655	JPH3	0.497663	6.619744e-8	1.147003e-3	2.340823e-5
50	8031522	8029728	NM_000164	GIPR	0.497373	6.755099e-8	1.170456e-3	2.340912e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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