[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5159	8069505	BX648100	C21orf15		chromosome 21 open reading frame 15

Fetching correlation data, please wait...
Getting list of correlations for id 5159.
Getting list of p-values for id 5159.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8069505	7918681	NM_018364	RSBN1	-0.494039	8.518533e-8	1.476006e-3	1.476006e-3
2	8069505	7903988	NM_001010935	RAP1A	-0.488206	1.270740e-7	2.201811e-3	1.100906e-3
3	8069505	7909586	NM_006243	PPP2R5A	-0.474248	3.212127e-7	5.565653e-3	1.855218e-3
4	8069505	8070708	NR_026961	LOC284837	0.472106	3.690211e-7	6.394028e-3	1.598507e-3
5	8069505	7957613	NM_017599	VEZT	-0.466872	5.158416e-7	8.937988e-3	1.787598e-3
6	8069505	8016947	NM_004758	BZRAP1	0.462682	6.718215e-7	1.164065e-2	1.940108e-3
7	8069505	7930422	NM_005445	SMC3	-0.461687	7.149425e-7	1.238781e-2	1.769687e-3
8	8069505	8160823	NM_147164	CNTFR	0.461659	7.162265e-7	1.241006e-2	1.551257e-3
9	8069505	8088339	NM_001660	ARF4	-0.460078	7.903119e-7	1.369373e-2	1.521526e-3
10	8069505	8083569	NM_015508	TIPARP	-0.459628	8.127049e-7	1.408174e-2	1.408174e-3
11	8069505	8160581	NM_005802	TOPORS	-0.458903	8.500266e-7	1.472841e-2	1.338946e-3
12	8069505	8169519	NM_019045	WDR44	-0.458277	8.835685e-7	1.530959e-2	1.275799e-3
13	8069505	8033635	NM_030957	ADAMTS10	0.457854	9.069777e-7	1.571520e-2	1.208862e-3
14	8069505	8047401	AK125394		-0.457064	9.521735e-7	1.649831e-2	1.178451e-3
15	8069505	8020129	NM_003574	VAPA	-0.457023	9.546168e-7	1.654065e-2	1.102710e-3
16	8069505	8019924	NM_006471	MYL12A	-0.454687	1.101538e-6	1.908636e-2	1.192897e-3
17	8069505	8012349	NM_002616	PER1	0.454393	1.121483e-6	1.943193e-2	1.143055e-3
18	8069505	8129254	NM_005907	MAN1A1	-0.454301	1.127780e-6	1.954104e-2	1.085613e-3
19	8069505	8047339	NR_026584	BZW1L1	-0.453972	1.150637e-6	1.993709e-2	1.049321e-3
20	8069505	7951091	ENST00000364279		0.453934	1.153322e-6	1.998361e-2	9.991804e-4
21	8069505	7972062	NM_012158	FBXL3	-0.453724	1.168111e-6	2.023986e-2	9.638029e-4
22	8069505	8046213	NM_172070	UBR3	-0.453358	1.194424e-6	2.069578e-2	9.407175e-4
23	8069505	7974473	NM_017943	FBXO34	-0.451243	1.357759e-6	2.352589e-2	1.022865e-3
24	8069505	8121947			0.451108	1.368899e-6	2.371892e-2	9.882883e-4
25	8069505	7933619	NM_147156	SGMS1	-0.450578	1.413404e-6	2.449006e-2	9.796022e-4
26	8069505	7965123	NM_001143885	PPP1R12A	-0.450197	1.446169e-6	2.505778e-2	9.637607e-4
27	8069505	8045619	NM_015630	EPC2	-0.450126	1.452402e-6	2.516578e-2	9.320658e-4
28	8069505	7961865	NM_033360	KRAS	-0.448560	1.595540e-6	2.764593e-2	9.873546e-4
29	8069505	7984289	NM_004663	RAB11A	-0.448084	1.641668e-6	2.844518e-2	9.808684e-4
30	8069505	8114326	NM_016603	FAM13B	-0.446206	1.836182e-6	3.181553e-2	1.060518e-3
31	8069505	8029728	NM_000164	GIPR	0.445940	1.865366e-6	3.232120e-2	1.042619e-3
32	8069505	8104314	NM_024337	IRX1	0.444545	2.026234e-6	3.510855e-2	1.097142e-3
33	8069505	8107330	NM_001127511	APC	-0.443251	2.186995e-6	3.789406e-2	1.148305e-3
34	8069505	7909992	NM_015176	FBXO28	-0.442900	2.232647e-6	3.868507e-2	1.137796e-3
35	8069505	7957177	NM_014999	RAB21	-0.442092	2.341120e-6	4.056458e-2	1.158988e-3
36	8069505	8172460	NM_001042498	SLC35A2	0.441717	2.393171e-6	4.146648e-2	1.151847e-3
37	8069505	8119801	NM_033450	ABCC10	0.441073	2.485081e-6	4.305900e-2	1.163757e-3
38	8069505	7900413	NM_005857	ZMPSTE24	-0.441005	2.495108e-6	4.323274e-2	1.137704e-3
39	8069505	8076128	NM_014876	JOSD1	-0.440846	2.518334e-6	4.363517e-2	1.118850e-3
40	8069505	7976598	NM_032632	PAPOLA	-0.440156	2.621781e-6	4.542760e-2	1.135690e-3
41	8069505	7903541	NM_007269	STXBP3	-0.439367	2.745148e-6	4.756517e-2	1.160126e-3
42	8069505	7938738	NM_004976	KCNC1	0.438872	2.825319e-6	4.895431e-2	1.165579e-3
43	8069505	7983111	NM_003825	SNAP23	-0.438428	2.898987e-6	5.023075e-2	1.168157e-3
44	8069505	7949931	NM_017635	SUV420H1	-0.438156	2.945127e-6	5.103021e-2	1.159778e-3
45	8069505	7922474	NM_014656	KIAA0040	-0.438111	2.952755e-6	5.116239e-2	1.136942e-3
46	8069505	7981427	NM_001823	CKB	0.437641	3.034180e-6	5.257324e-2	1.142897e-3
47	8069505	8089999	NR_026698	KPNA1	-0.437199	3.112811e-6	5.393568e-2	1.147568e-3
48	8069505	8173615	NM_183353	RLIM	-0.436659	3.211283e-6	5.564191e-2	1.159206e-3
49	8069505	7989323	NM_004330	BNIP2	-0.436638	3.215151e-6	5.570893e-2	1.136917e-3
50	8069505	7941865	NM_004584	RAD9A	0.436025	3.330802e-6	5.771280e-2	1.154256e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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