[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6230	8169519	NM_019045	WDR44		WD repeat domain 44

Fetching correlation data, please wait...
Getting list of correlations for id 6230.
Getting list of p-values for id 6230.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.157 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8169519	7989253	NM_024755	SLTM	0.870143	1.988489e-33	3.445454e-29	3.445454e-29
2	8169519	7903519	NM_018061	PRPF38B	0.864952	1.304848e-32	2.260910e-28	1.130455e-28
3	8169519	7967304	NM_198261	RSRC2	0.862767	2.815086e-32	4.877699e-28	1.625900e-28
4	8169519	8045619	NM_015630	EPC2	0.859848	7.702354e-32	1.334587e-27	3.336467e-28
5	8169519	7917120	NM_015017	USP33	0.859330	9.185349e-32	1.591545e-27	3.183091e-28
6	8169519	8050658	NM_017552	ATAD2B	0.859239	9.471968e-32	1.641208e-27	2.735346e-28
7	8169519	7939137	NM_006360	EIF3M	0.857141	1.919246e-31	3.325478e-27	4.750682e-28
8	8169519	8087951	NM_018165	PBRM1	0.856738	2.195748e-31	3.804573e-27	4.755716e-28
9	8169519	7929168	NM_025235	TNKS2	0.855837	2.960491e-31	5.129643e-27	5.699604e-28
10	8169519	8090898	NM_005862	STAG1	0.854869	4.072033e-31	7.055612e-27	7.055612e-28
11	8169519	8039947	NM_006625	SRSF10	0.853974	5.457694e-31	9.456546e-27	8.596860e-28
12	8169519	8111360	NM_016107	ZFR	0.851803	1.101237e-30	1.908114e-26	1.590095e-27
13	8169519	8152553	NM_003184	TAF2	0.851695	1.140126e-30	1.975497e-26	1.519613e-27
14	8169519	7943176	NM_004268	MED17	0.851032	1.409658e-30	2.442515e-26	1.744654e-27
15	8169519	7969114	NM_031915	SETDB2	0.848941	2.732277e-30	4.734217e-26	3.156145e-27
16	8169519	7968516	NM_015032	PDS5B	0.848412	3.225422e-30	5.588689e-26	3.492931e-27
17	8169519	7969271	NM_001130912	SUGT1	0.848074	3.585439e-30	6.212491e-26	3.654406e-27
18	8169519	8085852	NM_018297	NGLY1	0.848021	3.645552e-30	6.316648e-26	3.509249e-27
19	8169519	8095163	NM_001024924	EXOC1	0.847448	4.357546e-30	7.550319e-26	3.973852e-27
20	8169519	8112772	NM_003664	AP3B1	0.846532	5.788151e-30	1.002913e-25	5.014564e-27
21	8169519	7954279	NM_153207	AEBP2	0.845904	7.023374e-30	1.216940e-25	5.794952e-27
22	8169519	8132943	NM_001762	CCT6A	0.845130	8.904683e-30	1.542914e-25	7.013247e-27
23	8169519	8092564	NM_004593	TRA2B	0.844277	1.154877e-29	2.001055e-25	8.700240e-27
24	8169519	7971550	NM_014166	MED4	0.843676	1.386032e-29	2.401578e-25	1.000657e-26
25	8169519	8140942	NM_001040057	FAM133B	0.843407	1.503484e-29	2.605087e-25	1.042035e-26
26	8169519	8086077	NM_015097	CLASP2	0.842933	1.734279e-29	3.004986e-25	1.155764e-26
27	8169519	8113083	NM_032042	FAM172A	0.842794	1.808640e-29	3.133830e-25	1.160678e-26
28	8169519	8052526	NM_003400	XPO1	0.842757	1.828830e-29	3.168814e-25	1.131719e-26
29	8169519	7973770	NM_016106	SCFD1	0.842161	2.186776e-29	3.789027e-25	1.306561e-26
30	8169519	8088219	NM_001112736	C3orf63	0.842145	2.197262e-29	3.807195e-25	1.269065e-26
31	8169519	8100615	NM_018227	UBA6	0.842124	2.210992e-29	3.830986e-25	1.235802e-26
32	8169519	7969935	NM_000123	ERCC5	0.842036	2.270055e-29	3.933325e-25	1.229164e-26
33	8169519	8082607	NM_014382	ATP2C1	0.841426	2.723269e-29	4.718609e-25	1.429881e-26
34	8169519	7971820	NM_016075	VPS36	0.841221	2.895272e-29	5.016639e-25	1.475482e-26
35	8169519	8100251	NM_015030	FRYL	0.841131	2.973936e-29	5.152939e-25	1.472268e-26
36	8169519	7951008	NM_024116	TAF1D	0.840971	3.118744e-29	5.403847e-25	1.501069e-26
37	8169519	8134122	NM_005751	AKAP9	0.840860	3.223356e-29	5.585109e-25	1.509489e-26
38	8169519	8126018	NM_007271	STK38	0.840274	3.834135e-29	6.643405e-25	1.748264e-26
39	8169519	7985166	NM_004136	IREB2	0.839919	4.257138e-29	7.376343e-25	1.891370e-26
40	8169519	8135235	NM_004279	PMPCB	0.839598	4.680359e-29	8.109659e-25	2.027415e-26
41	8169519	7973902	NM_003136	SRP54	0.839592	4.687499e-29	8.122030e-25	1.980983e-26
42	8169519	7966343	ENST00000365465		0.838703	6.083943e-29	1.054165e-24	2.509916e-26
43	8169519	8144812	NM_006197	PCM1	0.838501	6.453978e-29	1.118281e-24	2.600653e-26
44	8169519	8174893	NM_001081550	THOC2	0.838426	6.596635e-29	1.142999e-24	2.597725e-26
45	8169519	8099860	NM_002913	RFC1	0.838322	6.800913e-29	1.178394e-24	2.618654e-26
46	8169519	7915995	NM_007051	FAF1	0.838152	7.145602e-29	1.238119e-24	2.691562e-26
47	8169519	8046213	NM_172070	UBR3	0.837718	8.107270e-29	1.404747e-24	2.988823e-26
48	8169519	8063283	NM_001316	CSE1L	0.837626	8.326354e-29	1.442707e-24	3.005640e-26
49	8169519	7987981	NM_174916	UBR1	0.837602	8.384714e-29	1.452819e-24	2.964937e-26
50	8169519	8058161	NM_006190	ORC2L	0.837235	9.327711e-29	1.616212e-24	3.232425e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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