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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4571 8081758 NM_017577 GRAMD1C link to infopage GRAM domain containing 1C

Fetching correlation data, please wait...
Getting list of correlations for id 4571.
Getting list of p-values for id 4571.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8081758 8162019 NM_017576 KIF27 link to infopage 0.701490 7.805381e-17 1.352438e-12 1.352438e-12
2 8081758 8113914 NM_133372 FNIP1 link to infopage 0.698882 1.132944e-16 1.963052e-12 9.815259e-13
3 8081758 8172056 NM_000328 RPGR link to infopage 0.696679 1.547159e-16 2.680763e-12 8.935877e-13
4 8081758 8082827 NM_025180 CEP63 link to infopage 0.693063 2.564810e-16 4.444046e-12 1.111011e-12
5 8081758 8008870 NM_030938 TMEM49 link to infopage 0.690865 3.474590e-16 6.020422e-12 1.204084e-12
6 8081758 8090630 NM_001017395 TMCC1 link to infopage 0.683876 8.964093e-16 1.553208e-11 2.588681e-12
7 8081758 8098121 NM_014247 RAPGEF2 link to infopage 0.681794 1.182981e-15 2.049752e-11 2.928217e-12
8 8081758 8152976 NM_144649 TMEM71 link to infopage 0.681767 1.187221e-15 2.057098e-11 2.571373e-12
9 8081758 8129693 ENST00000458970 link to infopage 0.678840 1.746381e-15 3.025954e-11 3.362171e-12
10 8081758 8016745 NM_001130528 SPAG9 link to infopage 0.675056 2.857513e-15 4.951213e-11 4.951213e-12
11 8081758 7954436 NM_006152 LRMP link to infopage 0.671554 4.477796e-15 7.758677e-11 7.053343e-12
12 8081758 7906819 NM_007348 ATF6 link to infopage 0.670343 5.222941e-15 9.049790e-11 7.541492e-12
13 8081758 8142036 NM_182691 SRPK2 link to infopage 0.669292 5.966351e-15 1.033790e-10 7.952227e-12
14 8081758 8064868 NM_019593 GPCPD1 link to infopage 0.663693 1.201121e-14 2.081183e-10 1.486559e-11
15 8081758 7933877 NM_004241 JMJD1C link to infopage 0.662715 1.355079e-14 2.347945e-10 1.565297e-11
16 8081758 8079140 NM_017719 SNRK link to infopage 0.662330 1.420797e-14 2.461814e-10 1.538634e-11
17 8081758 8013965 NM_033389 SSH2 link to infopage 0.661440 1.584877e-14 2.746116e-10 1.615363e-11
18 8081758 7981111 NM_177438 DICER1 link to infopage 0.661181 1.635976e-14 2.834655e-10 1.574808e-11
19 8081758 7932041 NM_080599 UPF2 link to infopage 0.661172 1.637793e-14 2.837803e-10 1.493581e-11
20 8081758 7975416 NM_014982 PCNX link to infopage 0.660458 1.787240e-14 3.096750e-10 1.548375e-11
21 8081758 8145365 NM_024940 DOCK5 link to infopage 0.658798 2.187439e-14 3.790176e-10 1.804846e-11
22 8081758 8124280 NM_014722 FAM65B link to infopage 0.657531 2.550024e-14 4.418427e-10 2.008376e-11
23 8081758 8056060 NM_013450 BAZ2B link to infopage 0.657137 2.674258e-14 4.633688e-10 2.014647e-11
24 8081758 7935403 NM_032900 ARHGAP19 link to infopage 0.656587 2.857308e-14 4.950858e-10 2.062857e-11
25 8081758 8049512 NM_001137552 LRRFIP1 link to infopage 0.655078 3.424558e-14 5.933732e-10 2.373493e-11
26 8081758 7950838 NM_007166 PICALM link to infopage 0.653410 4.178603e-14 7.240265e-10 2.784717e-11
27 8081758 8047839 NM_004379 CREB1 link to infopage 0.653279 4.244027e-14 7.353626e-10 2.723565e-11
28 8081758 7919751 NM_021960 MCL1 link to infopage 0.651655 5.144376e-14 8.913660e-10 3.183450e-11
29 8081758 8099410 NM_148894 BOD1L link to infopage 0.650039 6.222989e-14 1.078257e-9 3.718129e-11
30 8081758 7936064 NM_012229 NT5C2 link to infopage 0.649016 7.016158e-14 1.215690e-9 4.052299e-11
31 8081758 7942174 NM_003626 PPFIA1 link to infopage 0.646708 9.179332e-14 1.590503e-9 5.130654e-11
32 8081758 8040552 NM_147223 NCOA1 link to infopage 0.645616 1.041627e-13 1.804827e-9 5.640083e-11
33 8081758 8103226 NM_152680 TMEM154 link to infopage 0.645466 1.059842e-13 1.836388e-9 5.564813e-11
34 8081758 7924107 NM_014873 LPGAT1 link to infopage 0.645030 1.114547e-13 1.931175e-9 5.679926e-11
35 8081758 7925257 NM_000081 LYST link to infopage 0.644515 1.182533e-13 2.048976e-9 5.854216e-11
36 8081758 7980005 NM_001005743 NUMB link to infopage 0.643405 1.343291e-13 2.327520e-9 6.465334e-11
37 8081758 8093974 AF130051 link to infopage 0.643084 1.393669e-13 2.414811e-9 6.526516e-11
38 8081758 8156164 NM_017576 KIF27 link to infopage 0.642413 1.504624e-13 2.607061e-9 6.860688e-11
39 8081758 8093961 NM_014743 KIAA0232 link to infopage 0.642265 1.530380e-13 2.651689e-9 6.799202e-11
40 8081758 7986010 NM_003870 IQGAP1 link to infopage 0.641337 1.700986e-13 2.947299e-9 7.368247e-11
41 8081758 8079149 ENST00000410398 link to infopage 0.641327 1.702972e-13 2.950740e-9 7.196926e-11
42 8081758 8169580 NM_001560 IL13RA1 link to infopage 0.640694 1.829878e-13 3.170630e-9 7.549119e-11
43 8081758 7971461 NM_002298 LCP1 link to infopage 0.640412 1.889348e-13 3.273674e-9 7.613195e-11
44 8081758 8122600 NM_001127715 STXBP5 link to infopage 0.640108 1.955514e-13 3.388318e-9 7.700723e-11
45 8081758 8151890 NM_033285 TP53INP1 link to infopage 0.639916 1.998424e-13 3.462669e-9 7.694820e-11
46 8081758 8102817 NM_201999 ELF2 link to infopage 0.639687 2.050760e-13 3.553352e-9 7.724678e-11
47 8081758 8084794 NM_002182 IL1RAP link to infopage 0.639066 2.199830e-13 3.811645e-9 8.109883e-11
48 8081758 8144931 NM_001693 ATP6V1B2 link to infopage 0.638331 2.389435e-13 4.140174e-9 8.625363e-11
49 8081758 8091658 NM_020307 CCNL1 link to infopage 0.638055 2.464936e-13 4.270994e-9 8.716314e-11
50 8081758 8157233 NM_032303 HSDL2 link to infopage 0.637470 2.632111e-13 4.560658e-9 9.121317e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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