[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5117	8002660	NM_017853	TXNL4B		thioredoxin-like 4B

Fetching correlation data, please wait...
Getting list of correlations for id 5117.
Getting list of p-values for id 5117.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8002660	7926283	NM_003675	PRPF18	0.786609	2.681183e-23	4.645686e-19	4.645686e-19
2	8002660	8106479	NM_004866	SCAMP1	0.783409	5.281962e-23	9.152055e-19	4.576028e-19
3	8002660	8160622	NM_018225	SMU1	0.775757	2.554791e-22	4.426686e-18	1.475562e-18
4	8002660	7993872	NM_003366	UQCRC2	0.774686	3.169605e-22	5.491975e-18	1.372994e-18
5	8002660	8041273	NM_032312	YIPF4	0.769762	8.414932e-22	1.458055e-17	2.916111e-18
6	8002660	8114158	NM_002715	PPP2CA	0.769498	8.861170e-22	1.535375e-17	2.558958e-18
7	8002660	8045381	NM_058241	CCNT2	0.768372	1.103789e-21	1.912535e-17	2.732193e-18
8	8002660	8059596	NM_004238	TRIP12	0.767579	1.287367e-21	2.230620e-17	2.788275e-18
9	8002660	8123767	NM_003144	SSR1	0.766360	1.628986e-21	2.822544e-17	3.136160e-18
10	8002660	8166956	NM_021140	KDM6A	0.765458	1.937124e-21	3.356455e-17	3.356455e-18
11	8002660	8133809	NM_198467	RSBN1L	0.764809	2.193425e-21	3.800547e-17	3.455042e-18
12	8002660	8017235	NM_006380	APPBP2	0.764231	2.449026e-21	4.243427e-17	3.536189e-18
13	8002660	7903032	NM_007358	MTF2	0.763345	2.898200e-21	5.021711e-17	3.862854e-18
14	8002660	8152222	NM_015878	AZIN1	0.762998	3.095580e-21	5.363711e-17	3.831222e-18
15	8002660	8078834	NM_020839	WDR48	0.760204	5.235338e-21	9.071269e-17	6.047513e-18
16	8002660	8050565	NM_015317	PUM2	0.759454	6.020286e-21	1.043135e-16	6.519594e-18
17	8002660	7983335	NM_016396	CTDSPL2	0.759099	6.431334e-21	1.114357e-16	6.555043e-18
18	8002660	8099649	NM_001358	DHX15	0.758694	6.933793e-21	1.201418e-16	6.674546e-18
19	8002660	8081055	NM_014043	CHMP2B	0.758473	7.224015e-21	1.251705e-16	6.587921e-18
20	8002660	7987325	NM_014691	AQR	0.758092	7.751731e-21	1.343142e-16	6.715712e-18
21	8002660	7957806	NM_017988	SCYL2	0.757384	8.832606e-21	1.530426e-16	7.287742e-18
22	8002660	7987642	NM_016013	NDUFAF1	0.756912	9.635072e-21	1.669469e-16	7.588495e-18
23	8002660	7923659	NM_032833	PPP1R15B	0.755708	1.201329e-20	2.081542e-16	9.050183e-18
24	8002660	7994161	NM_006910	RBBP6	0.754693	1.445703e-20	2.504970e-16	1.043737e-17
25	8002660	7969017	NM_000321	RB1	0.754425	1.517623e-20	2.629586e-16	1.051834e-17
26	8002660	8115941	NM_052899	GPRIN1	-0.753134	1.917452e-20	3.322369e-16	1.277834e-17
27	8002660	7914180	NM_014752	SPCS2	0.752799	2.036800e-20	3.529163e-16	1.307097e-17
28	8002660	8023228	NM_017653	DYM	0.752459	2.165452e-20	3.752079e-16	1.340028e-17
29	8002660	7988753	NM_032802	SPPL2A	0.752117	2.302762e-20	3.989995e-16	1.375860e-17
30	8002660	8147724	NM_001695	ATP6V1C1	0.752103	2.308832e-20	4.000513e-16	1.333504e-17
31	8002660	8023195	NM_005901	SMAD2	0.751514	2.565981e-20	4.446076e-16	1.434218e-17
32	8002660	8095269	NM_000938	POLR2B	0.750981	2.822614e-20	4.890743e-16	1.528357e-17
33	8002660	7942553	NM_014752	SPCS2	0.750896	2.866065e-20	4.966031e-16	1.504858e-17
34	8002660	7931187	NM_004725	BUB3	0.750405	3.128175e-20	5.420189e-16	1.594173e-17
35	8002660	8109597	NM_145049	UBLCP1	0.749878	3.436131e-20	5.953785e-16	1.701081e-17
36	8002660	8090237	NM_021964	ZNF148	0.749625	3.593650e-20	6.226717e-16	1.729644e-17
37	8002660	8042270	NM_001001521	UGP2	0.749442	3.712471e-20	6.432599e-16	1.738540e-17
38	8002660	7974621	NM_002892	ARID4A	0.748614	4.298445e-20	7.447915e-16	1.959978e-17
39	8002660	7932000	NM_012311	KIN	0.748514	4.375308e-20	7.581097e-16	1.943871e-17
40	8002660	7932911	NM_004521	KIF5B	0.747862	4.908730e-20	8.505356e-16	2.126339e-17
41	8002660	7904695	NM_004892	SEC22B	0.747368	5.353606e-20	9.276193e-16	2.262486e-17
42	8002660	7938669	NM_014267	C11orf58	0.747175	5.538597e-20	9.596727e-16	2.284935e-17
43	8002660	7933115	NR_027269	SEPT7L	0.747122	5.590061e-20	9.685898e-16	2.252534e-17
44	8002660	8022882	NM_006965	ZNF24	0.746425	6.315864e-20	1.094350e-15	2.487159e-17
45	8002660	8083282	NM_032383	HPS3	0.745636	7.249432e-20	1.256109e-15	2.791353e-17
46	8002660	7926836	NM_021252	RAB18	0.745178	7.850026e-20	1.360174e-15	2.956900e-17
47	8002660	7932616	NM_005470	ABI1	0.745160	7.874799e-20	1.364466e-15	2.903120e-17
48	8002660	8068460	NM_015358	MORC3	0.744934	8.190350e-20	1.419142e-15	2.956546e-17
49	8002660	7996393	NM_001755	CBFB	0.744458	8.895834e-20	1.541381e-15	3.145676e-17
50	8002660	8091764	NM_002268	KPNA4	0.744445	8.915140e-20	1.544726e-15	3.089453e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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