[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3229	8149942	NM_018246	CCDC25		coiled-coil domain containing 25

Fetching correlation data, please wait...
Getting list of correlations for id 3229.
Getting list of p-values for id 3229.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8149942	7965048	NM_004537	NAP1L1	0.680499	1.403927e-15	2.432585e-11	2.432585e-11
2	8149942	8106534	NM_001114394	PAPD4	0.677773	2.007973e-15	3.479215e-11	1.739607e-11
3	8149942	7957186	NM_022771	TBC1D15	0.677723	2.020986e-15	3.501763e-11	1.167254e-11
4	8149942	8078360	NM_178862	STT3B	0.676406	2.398917e-15	4.156604e-11	1.039151e-11
5	8149942	7947221	NM_018362	LIN7C	0.674950	2.896847e-15	5.019367e-11	1.003873e-11
6	8149942	7966368	NM_002710	PPP1CC	0.671318	4.614653e-15	7.995809e-11	1.332635e-11
7	8149942	8096538	NM_001100426	RAP1GDS1	0.670777	4.943587e-15	8.565753e-11	1.223679e-11
8	8149942	8047815	NM_001136194	FASTKD2	0.670203	5.316545e-15	9.211977e-11	1.151497e-11
9	8149942	8055445	NM_001349	DARS	0.667713	7.278619e-15	1.261166e-10	1.401296e-11
10	8149942	8120992	NM_015021	ZNF292	0.667224	7.739221e-15	1.340975e-10	1.340975e-11
11	8149942	7956910	NM_018448	CAND1	0.663322	1.257416e-14	2.178725e-10	1.980659e-11
12	8149942	8106479	NM_004866	SCAMP1	0.663093	1.293404e-14	2.241081e-10	1.867567e-11
13	8149942	7930422	NM_005445	SMC3	0.658449	2.282100e-14	3.954195e-10	3.041688e-11
14	8149942	7916969	NM_005455	ZRANB2	0.655589	3.221370e-14	5.581667e-10	3.986905e-11
15	8149942	8078569	NM_002078	GOLGA4	0.655526	3.245801e-14	5.624000e-10	3.749333e-11
16	8149942	8120758	NM_015571	SENP6	0.653855	3.962769e-14	6.866291e-10	4.291432e-11
17	8149942	8107164	NM_015216	PPIP5K2	0.651723	5.103440e-14	8.842730e-10	5.201606e-11
18	8149942	8156718	NM_002486	NCBP1	0.650486	5.904806e-14	1.023126e-9	5.684032e-11
19	8149942	7978449	NM_015382	HECTD1	0.650182	6.119792e-14	1.060376e-9	5.580928e-11
20	8149942	7968835	NM_016248	AKAP11	0.648917	7.097215e-14	1.229734e-9	6.148672e-11
21	8149942	8006325	NM_015355	SUZ12	0.648014	7.886282e-14	1.366456e-9	6.506934e-11
22	8149942	7903308	NM_019083	CCDC76	0.647947	7.948344e-14	1.377210e-9	6.260043e-11
23	8149942	8171041	NM_005638	VAMP7	0.647851	8.037563e-14	1.392669e-9	6.055081e-11
24	8149942	8176962	NM_005638	VAMP7	0.647851	8.037563e-14	1.392669e-9	5.802786e-11
25	8149942	7936567	NM_014904	RAB11FIP2	0.647379	8.491960e-14	1.471402e-9	5.885607e-11
26	8149942	8120382	NM_001031623	ZNF451	0.647314	8.556324e-14	1.482554e-9	5.702132e-11
27	8149942	8107613	NM_003100	SNX2	0.647176	8.694143e-14	1.506434e-9	5.579386e-11
28	8149942	8042270	NM_001001521	UGP2	0.646625	9.268833e-14	1.606011e-9	5.735753e-11
29	8149942	7932678	NM_139312	YME1L1	0.646554	9.344620e-14	1.619142e-9	5.583249e-11
30	8149942	8040386	NM_004939	DDX1	0.645838	1.015302e-13	1.759214e-9	5.864045e-11
31	8149942	8069711	NM_015565	RNF160	0.644741	1.152181e-13	1.996383e-9	6.439946e-11
32	8149942	7980940	NM_004993	ATXN3	0.644419	1.195709e-13	2.071805e-9	6.474392e-11
33	8149942	8069574	NM_001100420	C21orf91	0.643930	1.264846e-13	2.191599e-9	6.641209e-11
34	8149942	8017235	NM_006380	APPBP2	0.643365	1.349466e-13	2.338220e-9	6.877119e-11
35	8149942	8116227	NM_020666	CLK4	0.643109	1.389580e-13	2.407725e-9	6.879215e-11
36	8149942	8147724	NM_001695	ATP6V1C1	0.642776	1.443596e-13	2.501319e-9	6.948107e-11
37	8149942	7950544	NM_004705	PRKRIR	0.642057	1.567015e-13	2.715167e-9	7.338288e-11
38	8149942	7968670	NM_016617	UFM1	0.641751	1.622623e-13	2.811518e-9	7.398732e-11
39	8149942	7910550	NM_005999	TSNAX	0.640825	1.802781e-13	3.123679e-9	8.009434e-11
40	8149942	8045697	NM_018151	RIF1	0.640812	1.805435e-13	3.128278e-9	7.820694e-11
41	8149942	8149475	NM_013354	CNOT7	0.640704	1.827777e-13	3.166989e-9	7.724363e-11
42	8149942	8152222	NM_015878	AZIN1	0.640187	1.937982e-13	3.357942e-9	7.995099e-11
43	8149942	8156604	BC022957	C9orf102	0.639985	1.982889e-13	3.435751e-9	7.990118e-11
44	8149942	8046759	NM_018981	DNAJC10	0.639142	2.180989e-13	3.779000e-9	8.588637e-11
45	8149942	7954021	NM_001310	CREBL2	0.639057	2.202079e-13	3.815541e-9	8.478981e-11
46	8149942	7978542	NM_020696	KIAA1143	0.638391	2.373358e-13	4.112318e-9	8.939821e-11
47	8149942	7988963	NM_006628	ARPP19	0.638158	2.436451e-13	4.221639e-9	8.982211e-11
48	8149942	8084016	NM_006218	PIK3CA	0.637551	2.608257e-13	4.519327e-9	9.415265e-11
49	8149942	8068062	NM_006447	USP16	0.637494	2.624986e-13	4.548313e-9	9.282271e-11
50	8149942	8092849	NM_024524	ATP13A3	0.637175	2.720602e-13	4.713987e-9	9.427974e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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