[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5019	8116162	NM_006261	PROP1		PROP paired-like homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 5019.
Getting list of p-values for id 5019.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8116162	7911750	NM_001010926	HES5	0.766769	1.505560e-21	2.608685e-17	2.608685e-17
2	8116162	7935983	NM_005029	PITX3	0.764220	2.454199e-21	4.252390e-17	2.126195e-17
3	8116162	8064676	NM_145762	GFRA4	0.763546	2.789903e-21	4.834064e-17	1.611355e-17
4	8116162	8151609	NM_172239	REXO1L1	0.761307	4.258266e-21	7.378297e-17	1.844574e-17
5	8116162	7948176	NM_033396	TNKS1BP1	0.758916	6.654232e-21	1.152979e-16	2.305957e-17
6	8116162	7896761	NM_152486	SAMD11	0.753586	1.767178e-20	3.061989e-16	5.103314e-17
7	8116162	8028389	NM_001042522	SPRED3	0.753331	1.850318e-20	3.206046e-16	4.580066e-17
8	8116162	8133704	NM_001110199	SRRM3	0.747750	5.006281e-20	8.674384e-16	1.084298e-16
9	8116162	8098732	NM_033178	DUX4	0.747446	5.280780e-20	9.150008e-16	1.016668e-16
10	8116162	7992049	NM_207112	HAGHL	0.745665	7.212286e-20	1.249673e-15	1.249673e-16
11	8116162	7994052	NM_006043	HS3ST2	0.745416	7.531530e-20	1.304988e-15	1.186353e-16
12	8116162	8098740	NM_033178	DUX4	0.744688	8.548128e-20	1.481134e-15	1.234278e-16
13	8116162	7935528	NM_003015	SFRP5	0.742161	1.321754e-19	2.290204e-15	1.761695e-16
14	8116162	8006562	NM_033315	RASL10B	0.741354	1.517588e-19	2.629526e-15	1.878233e-16
15	8116162	7931181	NM_001105574	HMX3	0.737568	2.881731e-19	4.993176e-15	3.328784e-16
16	8116162	7986248	AY358245	LOC643797	0.737154	3.088860e-19	5.352068e-15	3.345042e-16
17	8116162	8165453	NM_001013653	LRRC26	0.735862	3.832881e-19	6.641233e-15	3.906608e-16
18	8116162	7950032	NM_002007	FGF4	0.735612	3.996062e-19	6.923976e-15	3.846654e-16
19	8116162	8040479	NM_182828	GDF7	0.734382	4.901398e-19	8.492652e-15	4.469817e-16
20	8116162	7992269	ENST00000301714		0.734195	5.055326e-19	8.759364e-15	4.379682e-16
21	8116162	8050805	NM_001035256	POMC	0.733648	5.532885e-19	9.586829e-15	4.565157e-16
22	8116162	8104122	NM_033178	DUX4	0.733285	5.874493e-19	1.017873e-14	4.626697e-16
23	8116162	8064394	ENST00000217256		0.732281	6.928280e-19	1.200463e-14	5.219405e-16
24	8116162	7949015	NM_001144936	C11orf95	0.730768	8.871381e-19	1.537144e-14	6.404768e-16
25	8116162	8137959	NM_001080495	TNRC18	0.729184	1.147111e-18	1.987600e-14	7.950399e-16
26	8116162	8032034	NM_001136263	C2CD4C	0.728703	1.239860e-18	2.148305e-14	8.262713e-16
27	8116162	7942693	NM_138706	B3GNT6	0.727034	1.621265e-18	2.809166e-14	1.040432e-15
28	8116162	7896865	NM_153254	TTLL10	0.726807	1.681476e-18	2.913493e-14	1.040533e-15
29	8116162	8121209	NM_005604	POU3F2	0.726487	1.769629e-18	3.066237e-14	1.057323e-15
30	8116162	7991939	NM_145294	WDR90	0.724150	2.565839e-18	4.445830e-14	1.481943e-15
31	8116162	8162920	NM_147180	PPP3R2	0.724004	2.625644e-18	4.549454e-14	1.467566e-15
32	8116162	8048205	NM_000597	IGFBP2	0.723992	2.630929e-18	4.558611e-14	1.424566e-15
33	8116162	7937433	NM_000797	DRD4	0.721941	3.632935e-18	6.294786e-14	1.907511e-15
34	8116162	8153876	NM_025251	ARHGAP39	0.721307	4.011513e-18	6.950748e-14	2.044338e-15
35	8116162	8014269	NM_139285	GAS2L2	0.720677	4.425965e-18	7.668870e-14	2.191106e-15
36	8116162	7937106	NM_177400	NKX6-2	0.720010	4.909537e-18	8.506755e-14	2.362987e-15
37	8116162	8010696	NM_148896	NPB	0.719870	5.017354e-18	8.693570e-14	2.349613e-15
38	8116162	8019693	NM_148896	NPB	0.719870	5.017354e-18	8.693570e-14	2.287782e-15
39	8116162	8024250	NM_001405	EFNA2	0.719771	5.095055e-18	8.828201e-14	2.263641e-15
40	8116162	7896779	NM_198317	KLHL17	0.719565	5.260979e-18	9.115697e-14	2.278924e-15
41	8116162	8049239	AY358535	C2orf82	0.719509	5.306825e-18	9.195136e-14	2.242716e-15
42	8116162	8174642	ENST00000436902		0.719485	5.326691e-18	9.229558e-14	2.197514e-15
43	8116162	7977033	NM_030943	AMN	0.718990	5.750597e-18	9.964059e-14	2.317223e-15
44	8116162	7919582	XR_039086	LOC100133075	0.718672	6.040269e-18	1.046597e-13	2.378630e-15
45	8116162	8110546	NM_014757	MAML1	0.718593	6.114787e-18	1.059509e-13	2.354465e-15
46	8116162	8144703			0.718130	6.567141e-18	1.137888e-13	2.473671e-15
47	8116162	7955869	NM_022658	HOXC8	0.717976	6.724203e-18	1.165103e-13	2.478942e-15
48	8116162	8025053	NM_003811	TNFSF9	0.717775	6.935679e-18	1.201745e-13	2.503636e-15
49	8116162	7997569	NM_139174	ADAD2	0.717739	6.974407e-18	1.208455e-13	2.466236e-15
50	8116162	8038109	NM_017708	FAM83E	0.717729	6.984858e-18	1.210266e-13	2.420533e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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