[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6225	8165171	NM_019892	INPP5E		inositol polyphosphate-5-phosphatase, 72 kDa

Fetching correlation data, please wait...
Getting list of correlations for id 6225.
Getting list of p-values for id 6225.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165171	8079021	NM_001904	CTNNB1	-0.799635	1.496738e-24	2.593398e-20	2.593398e-20
2	8165171	8102982	BC064848	GAB1	0.796419	3.111002e-24	5.390434e-20	2.695217e-20
3	8165171	8080158	NM_080865	GPR62	0.795293	4.007065e-24	6.943042e-20	2.314347e-20
4	8165171	7914003	BC033143	C1orf172	0.784354	4.328496e-23	7.499986e-19	1.874996e-19
5	8165171	8113469	NM_014819	PJA2	-0.782928	5.842947e-23	1.012407e-18	2.024815e-19
6	8165171	8120022	NM_001253	CDC5L	-0.779296	1.242078e-22	2.152149e-18	3.586915e-19
7	8165171	7922646	NM_022347	TOR1AIP2	-0.779185	1.270773e-22	2.201869e-18	3.145527e-19
8	8165171	8022882	NM_006965	ZNF24	-0.776117	2.375470e-22	4.115976e-18	5.144970e-19
9	8165171	7897280	NM_001024598	HES3	0.775923	2.470278e-22	4.280251e-18	4.755834e-19
10	8165171	7998634	NM_001009606	HS3ST6	0.775855	2.504689e-22	4.339874e-18	4.339874e-19
11	8165171	8105191	NM_024615	PARP8	-0.774720	3.147600e-22	5.453846e-18	4.958042e-19
12	8165171	7896798	NM_032129	PLEKHN1	0.774695	3.163990e-22	5.482246e-18	4.568538e-19
13	8165171	7992049	NM_207112	HAGHL	0.774066	3.589161e-22	6.218939e-18	4.783800e-19
14	8165171	8117165	NM_003107	SOX4	0.773336	4.152684e-22	7.195355e-18	5.139539e-19
15	8165171	8148208	NM_144963	FAM91A1	-0.772911	4.519319e-22	7.830625e-18	5.220416e-19
16	8165171	7983663	NM_005154	USP8	-0.770859	6.783933e-22	1.175452e-17	7.346575e-19
17	8165171	7935983	NM_005029	PITX3	0.770529	7.239535e-22	1.254394e-17	7.378790e-19
18	8165171	8061324	NM_012255	XRN2	-0.769904	8.184604e-22	1.418146e-17	7.878591e-19
19	8165171	8008969	NM_005994	TBX2	0.769833	8.297900e-22	1.437777e-17	7.567248e-19
20	8165171	8098512	NM_021942	C4orf41	-0.769578	8.723037e-22	1.511441e-17	7.557203e-19
21	8165171	8104268	NM_001003841	SLC6A19	0.769045	9.680597e-22	1.677357e-17	7.987415e-19
22	8165171	8018502	NM_173547	TRIM65	0.768687	1.038002e-21	1.798546e-17	8.175207e-19
23	8165171	8137715	NM_182924	MICALL2	0.768114	1.160567e-21	2.010915e-17	8.743107e-19
24	8165171	7945550	NM_018494	LRDD	0.766297	1.648801e-21	2.856877e-17	1.190365e-18
25	8165171	8050190	NM_003183	ADAM17	-0.765543	1.905891e-21	3.302337e-17	1.320935e-18
26	8165171	8138670	NM_031243	HNRNPA2B1	-0.764921	2.146927e-21	3.719980e-17	1.430762e-18
27	8165171	7908978	NM_014827	ZC3H11A	-0.764215	2.456438e-21	4.256271e-17	1.576397e-18
28	8165171	7974771	NM_022495	C14orf135	-0.763923	2.596965e-21	4.499762e-17	1.607058e-18
29	8165171	8164452	NM_032799	ZDHHC12	0.763541	2.792469e-21	4.838510e-17	1.668452e-18
30	8165171	8137228	NM_173680	ZNF775	0.763456	2.838202e-21	4.917753e-17	1.639251e-18
31	8165171	8138757	NM_018951	HOXA10	0.763243	2.955202e-21	5.120478e-17	1.651767e-18
32	8165171	7912004	NM_207370	GPR153	0.762743	3.248681e-21	5.628990e-17	1.759059e-18
33	8165171	7967969	NM_138284	IL17D	0.762161	3.625988e-21	6.282749e-17	1.903863e-18
34	8165171	8153876	NM_025251	ARHGAP39	0.761457	4.139399e-21	7.172337e-17	2.109511e-18
35	8165171	8070933	NM_006657	FTCD	0.760916	4.582483e-21	7.940069e-17	2.268591e-18
36	8165171	7896985	NM_080875	MIB2	0.760264	5.176461e-21	8.969254e-17	2.491459e-18
37	8165171	7998679	NM_178167	ZNF598	0.759740	5.708139e-21	9.890493e-17	2.673106e-18
38	8165171	7965359	NM_001001323	ATP2B1	-0.759422	6.057029e-21	1.049501e-16	2.761846e-18
39	8165171	7911435	NM_001014980	FAM132A	0.757264	9.031309e-21	1.564855e-16	4.012448e-18
40	8165171	7922823	NM_025191	EDEM3	-0.757168	9.191629e-21	1.592634e-16	3.981584e-18
41	8165171	7919582	XR_039086	LOC100133075	0.757120	9.273522e-21	1.606823e-16	3.919081e-18
42	8165171	7938738	NM_004976	KCNC1	0.755927	1.154261e-20	1.999988e-16	4.761877e-18
43	8165171	7930454	NM_145341	PDCD4	-0.755757	1.190616e-20	2.062981e-16	4.797630e-18
44	8165171	7947928	NM_031909	C1QTNF4	0.755565	1.233136e-20	2.136655e-16	4.856033e-18
45	8165171	8084219	NM_017644	KLHL24	-0.755008	1.365109e-20	2.365325e-16	5.256277e-18
46	8165171	7942123	NM_053056	CCND1	0.754990	1.369545e-20	2.373011e-16	5.158720e-18
47	8165171	8052680	NM_004161	RAB1A	-0.754262	1.563376e-20	2.708862e-16	5.763535e-18
48	8165171	8093440	NM_001004356	FGFRL1	0.753922	1.662727e-20	2.881006e-16	6.002097e-18
49	8165171	8061944	BC137111	C20orf134	0.753836	1.688933e-20	2.926414e-16	5.972273e-18
50	8165171	8114550	NM_004883	NRG2	0.753398	1.828240e-20	3.167791e-16	6.335583e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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