[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5429	8158912	NM_020064	BARHL1		BarH-like homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 5429.
Getting list of p-values for id 5429.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8158912	8131087	NM_001080461	UNCX	0.849034	2.653549e-30	4.597804e-26	4.597804e-26
2	8158912	8060604	NM_000915	OXT	0.837358	9.000254e-29	1.559474e-24	7.797370e-25
3	8158912	7947928	NM_031909	C1QTNF4	0.834444	2.077166e-28	3.599106e-24	1.199702e-24
4	8158912	7937433	NM_000797	DRD4	0.823855	3.801565e-27	6.586972e-23	1.646743e-23
5	8158912	7912004	NM_207370	GPR153	0.818327	1.607102e-26	2.784626e-22	5.569253e-23
6	8158912	8013112	NM_016084	RASD1	0.813713	5.159342e-26	8.939592e-22	1.489932e-22
7	8158912	8074063	NM_024866	ADM2	0.812924	6.278286e-26	1.087839e-21	1.554055e-22
8	8158912	8052018	NM_022055	KCNK12	0.812851	6.391822e-26	1.107511e-21	1.384389e-22
9	8158912	7897006	NM_006983	MMP23B	0.812350	7.235848e-26	1.253755e-21	1.393062e-22
10	8158912	8153876	NM_025251	ARHGAP39	0.809713	1.381738e-25	2.394137e-21	2.394137e-22
11	8158912	7932308	NM_001010908	C1QL3	0.809320	1.520194e-25	2.634041e-21	2.394582e-22
12	8158912	8064242	NR_027686	NCRNA00176	0.808206	1.990937e-25	3.449697e-21	2.874748e-22
13	8158912	8137330	ENST00000356058		0.806377	3.087653e-25	5.349976e-21	4.115366e-22
14	8158912	7992845	NM_003456	ZNF205	0.802930	6.972372e-25	1.208103e-20	8.629307e-22
15	8158912	8098732	NM_033178	DUX4	0.801167	1.051038e-24	1.821133e-20	1.214089e-21
16	8158912	8027222	NM_153221	CILP2	0.799867	1.418904e-24	2.458534e-20	1.536584e-21
17	8158912	8039524	NM_152600	ZNF579	0.799799	1.441207e-24	2.497180e-20	1.468929e-21
18	8158912	8098740	NM_033178	DUX4	0.799251	1.634478e-24	2.832059e-20	1.573366e-21
19	8158912	8014969	NM_152219	GJD3	0.798770	1.824707e-24	3.161671e-20	1.664037e-21
20	8158912	7929840	NM_003987	PAX2	0.798617	1.889240e-24	3.273486e-20	1.636743e-21
21	8158912	8108134	NM_014829	DDX46	-0.798390	1.989704e-24	3.447559e-20	1.641695e-21
22	8158912	8153862	NM_001024678	LRRC24	0.798065	2.142845e-24	3.712907e-20	1.687685e-21
23	8158912	8138770	NM_000522	HOXA13	0.797308	2.545014e-24	4.409746e-20	1.917281e-21
24	8158912	7900001	NM_178548	TFAP2E	0.796838	2.830385e-24	4.904207e-20	2.043420e-21
25	8158912	8029624	ENST00000421905		0.795377	3.932997e-24	6.814705e-20	2.725882e-21
26	8158912	8032034	NM_001136263	C2CD4C	0.794309	4.992789e-24	8.651006e-20	3.327310e-21
27	8158912	7945445	BC039077	C11orf35	0.794272	5.034099e-24	8.722584e-20	3.230587e-21
28	8158912	8030015	NM_012451	SYNGR4	0.794270	5.036322e-24	8.726435e-20	3.116584e-21
29	8158912	8030842	hsa-mir-99b		0.792743	7.068977e-24	1.224842e-19	4.223592e-21
30	8158912	7952893	BC024764	IQSEC3	0.792277	7.833910e-24	1.357382e-19	4.524605e-21
31	8158912	8133704	NM_001110199	SRRM3	0.792049	8.237550e-24	1.427320e-19	4.604259e-21
32	8158912	8010696	NM_148896	NPB	0.791301	9.708096e-24	1.682122e-19	5.256631e-21
33	8158912	8019693	NM_148896	NPB	0.791301	9.708096e-24	1.682122e-19	5.097339e-21
34	8158912	8037651	NM_175875	SIX5	0.790993	1.038620e-23	1.799617e-19	5.292991e-21
35	8158912	7977432	NM_025268	TMEM121	0.790738	1.098337e-23	1.903089e-19	5.437397e-21
36	8158912	8091048	NR_023350	COPB2	-0.790413	1.179120e-23	2.043062e-19	5.675172e-21
37	8158912	7997569	NM_139174	ADAD2	0.790272	1.215872e-23	2.106742e-19	5.693897e-21
38	8158912	8166500	NM_003410	ZFX	-0.789863	1.329097e-23	2.302927e-19	6.060333e-21
39	8158912	7922912	NM_003292	TPR	-0.789545	1.424225e-23	2.467755e-19	6.327576e-21
40	8158912	8074131	NM_001080420	SHANK3	0.789296	1.503435e-23	2.605002e-19	6.512505e-21
41	8158912	8033455	ENST00000327607		0.789120	1.561663e-23	2.705893e-19	6.599738e-21
42	8158912	8121209	NM_005604	POU3F2	0.787457	2.235461e-23	3.873384e-19	9.222342e-21
43	8158912	7977033	NM_030943	AMN	0.787204	2.360154e-23	4.089440e-19	9.510324e-21
44	8158912	8009430	NR_027283	LOC440461	0.786885	2.527092e-23	4.378692e-19	9.951573e-21
45	8158912	7918416	NM_006492	ALX3	0.786086	2.997310e-23	5.193439e-19	1.154098e-20
46	8158912	8110382	NM_030567	PRR7	0.786060	3.014087e-23	5.222509e-19	1.135328e-20
47	8158912	7896929	NM_022834	VWA1	0.785558	3.354364e-23	5.812106e-19	1.236618e-20
48	8158912	7940022	NM_178570	RTN4RL2	0.785187	3.628874e-23	6.287750e-19	1.309948e-20
49	8158912	8155942	NM_001013735	FOXB2	0.785159	3.650590e-23	6.325377e-19	1.290893e-20
50	8158912	8048460	NM_003936	CDK5R2	0.784480	4.215154e-23	7.303597e-19	1.460719e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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