[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1481	7968563	NM_002915	RFC3		replication factor C (activator 1) 3, 38kDa

Fetching correlation data, please wait...
Getting list of correlations for id 1481.
Getting list of p-values for id 1481.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7968563	8114193	NM_001033503	SAR1B	0.651560	5.202588e-14	9.014525e-10	9.014525e-10
2	7968563	7984298	NM_133375	DIS3L	0.647685	8.195074e-14	1.419960e-9	7.099802e-10
3	7968563	8082750	NM_024818	UBA5	0.644428	1.194558e-13	2.069811e-9	6.899370e-10
4	7968563	8047815	NM_001136194	FASTKD2	0.633784	3.967843e-13	6.875082e-9	1.718770e-9
5	7968563	8111533	NM_001007527	LMBRD2	0.620833	1.608460e-12	2.786979e-8	5.573958e-9
6	7968563	7918847	NM_001102396	SIKE1	0.619863	1.781730e-12	3.087203e-8	5.145338e-9
7	7968563	8083605	NM_016625	RSRC1	0.619833	1.787223e-12	3.096721e-8	4.423888e-9
8	7968563	8168087	NM_001551	IGBP1	0.619564	1.838564e-12	3.185679e-8	3.982099e-9
9	7968563	8027279	NM_025189	ZNF430	0.619095	1.931315e-12	3.346389e-8	3.718210e-9
10	7968563	8097066	NM_020961	METTL14	0.614515	3.111043e-12	5.390505e-8	5.390505e-9
11	7968563	8101411	NM_194282	LIN54	0.612431	3.854882e-12	6.679354e-8	6.072140e-9
12	7968563	8156604	BC022957	C9orf102	0.611527	4.228678e-12	7.327030e-8	6.105858e-9
13	7968563	8146914	NM_017489	TERF1	0.609462	5.217900e-12	9.041056e-8	6.954659e-9
14	7968563	8051413	NM_015475	FAM98A	0.608381	5.821547e-12	1.008699e-7	7.204996e-9
15	7968563	8049682	hsa-mir-149		-0.607812	6.165834e-12	1.068354e-7	7.122360e-9
16	7968563	7966462	NM_024953	NAA25	0.607302	6.490376e-12	1.124587e-7	7.028671e-9
17	7968563	8059319	NM_005687	FARSB	0.605701	7.622161e-12	1.320692e-7	7.768775e-9
18	7968563	8126394	NM_018141	MRPS10	0.605533	7.751427e-12	1.343090e-7	7.461610e-9
19	7968563	7951046	NM_005591	MRE11A	0.605446	7.819339e-12	1.354857e-7	7.130826e-9
20	7968563	8097704	NM_018241	TMEM184C	0.603708	9.299528e-12	1.611329e-7	8.056646e-9
21	7968563	7971184	NM_005830	MRPS31	0.603385	9.602303e-12	1.663791e-7	7.922815e-9
22	7968563	7918759	NM_005872	BCAS2	0.603070	9.907071e-12	1.716598e-7	7.802719e-9
23	7968563	8015187	NM_030967	KRTAP1-1	-0.600535	1.272572e-11	2.204986e-7	9.586894e-9
24	7968563	8107282	NM_139281	WDR36	0.600437	1.284867e-11	2.226290e-7	9.276207e-9
25	7968563	7968711	NR_026745	COG6	0.597414	1.726898e-11	2.992196e-7	1.196878e-8
26	7968563	7917604	NM_201269	ZNF644	0.597224	1.759028e-11	3.047867e-7	1.172257e-8
27	7968563	8137707	hsa-mir-339		-0.595477	2.083637e-11	3.610317e-7	1.337154e-8
28	7968563	7907124	NM_152902	TIPRL	0.595152	2.149917e-11	3.725161e-7	1.330415e-8
29	7968563	8097480	NM_057175	NAA15	0.594962	2.189761e-11	3.794198e-7	1.308344e-8
30	7968563	8129706	NM_006620	HBS1L	0.594809	2.222402e-11	3.850756e-7	1.283585e-8
31	7968563	8142019	NM_002553	ORC5L	0.594654	2.255696e-11	3.908445e-7	1.260789e-8
32	7968563	8162696	NR_027302	XPA	0.593977	2.407724e-11	4.171863e-7	1.303707e-8
33	7968563	7926356	NM_001001484	PTER	0.593885	2.428951e-11	4.208644e-7	1.275347e-8
34	7968563	7971820	NM_016075	VPS36	0.593759	2.458558e-11	4.259943e-7	1.252924e-8
35	7968563	7957613	NM_017599	VEZT	0.592286	2.831277e-11	4.905753e-7	1.401644e-8
36	7968563	7924190	NM_144567	ANGEL2	0.592030	2.901351e-11	5.027171e-7	1.396436e-8
37	7968563	8156167	NM_024635	NAA35	0.591408	3.078734e-11	5.334522e-7	1.441763e-8
38	7968563	7947221	NM_018362	LIN7C	0.591357	3.093637e-11	5.360344e-7	1.410617e-8
39	7968563	8020323	NM_003799	RNMT	0.591287	3.114452e-11	5.396411e-7	1.383695e-8
40	7968563	7916836	NM_001018067	SERBP1	0.590400	3.388511e-11	5.871273e-7	1.467818e-8
41	7968563	8046759	NM_018981	DNAJC10	0.589229	3.786275e-11	6.560479e-7	1.600117e-8
42	7968563	8069037	NM_000383	AIRE	-0.588681	3.987360e-11	6.908898e-7	1.644976e-8
43	7968563	7956949	NM_020401	NUP107	0.587959	4.268521e-11	7.396066e-7	1.720015e-8
44	7968563	7924351	NM_004446	EPRS	0.587905	4.290256e-11	7.433727e-7	1.689483e-8
45	7968563	8155770	NM_015110	SMC5	0.587065	4.642590e-11	8.044215e-7	1.787603e-8
46	7968563	8054437	NM_022662	ANAPC1	0.586809	4.755686e-11	8.240177e-7	1.791343e-8
47	7968563	7930422	NM_005445	SMC3	0.586487	4.901192e-11	8.492295e-7	1.806871e-8
48	7968563	8121161	NM_015323	KIAA0776	0.586454	4.916757e-11	8.519264e-7	1.774847e-8
49	7968563	8027241	NM_021047	ZNF253	0.586413	4.935602e-11	8.551918e-7	1.745289e-8
50	7968563	8023605	NM_176787	PIGN	0.586143	5.061951e-11	8.770843e-7	1.754169e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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