[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
421	8159876	NM_134428	RFX3		regulatory factor X, 3 (influences HLA class II expression)

Fetching correlation data, please wait...
Getting list of correlations for id 421.
Getting list of p-values for id 421.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8159876	7979367	NM_006544	EXOC5	0.763277	2.935863e-21	5.086970e-17	5.086970e-17
2	8159876	8052307	NM_001122964	SMEK2	0.759896	5.544299e-21	9.606607e-17	4.803303e-17
3	8159876	8052024	NM_025133	FBXO11	0.757395	8.814531e-21	1.527294e-16	5.090979e-17
4	8159876	8050190	NM_003183	ADAM17	0.757156	9.211234e-21	1.596030e-16	3.990076e-17
5	8159876	8162833	NM_015051	ERP44	0.754791	1.419918e-20	2.460292e-16	4.920584e-17
6	8159876	7922823	NM_025191	EDEM3	0.751901	2.393775e-20	4.147695e-16	6.912824e-17
7	8159876	8050565	NM_015317	PUM2	0.750782	2.924621e-20	5.067491e-16	7.239273e-17
8	8159876	8045381	NM_058241	CCNT2	0.748540	4.354851e-20	7.545650e-16	9.432062e-17
9	8159876	8166956	NM_021140	KDM6A	0.743172	1.110965e-19	1.924969e-15	2.138854e-16
10	8159876	7936826	NM_022466	IKZF5	0.742808	1.182682e-19	2.049234e-15	2.049234e-16
11	8159876	7974771	NM_022495	C14orf135	0.741657	1.440995e-19	2.496812e-15	2.269829e-16
12	8159876	8031815	NM_173632	ZNF776	0.737810	2.766742e-19	4.793934e-15	3.994945e-16
13	8159876	8099926	NM_001100399	PDS5A	0.736680	3.344144e-19	5.794399e-15	4.457230e-16
14	8159876	8129773	NM_014739	BCLAF1	0.731855	7.428179e-19	1.287081e-14	9.193433e-16
15	8159876	7925201	NM_016374	ARID4B	0.731422	7.973829e-19	1.381625e-14	9.210835e-16
16	8159876	7908437	NM_024529	CDC73	0.731243	8.210204e-19	1.422582e-14	8.891138e-16
17	8159876	7930276	NM_014720	SLK	0.729995	1.005908e-18	1.742936e-14	1.025256e-15
18	8159876	7989806	NM_197960	DPP8	0.729712	1.053147e-18	1.824787e-14	1.013771e-15
19	8159876	7950606	NM_016578	RSF1	0.728800	1.220617e-18	2.114963e-14	1.113138e-15
20	8159876	8022882	NM_006965	ZNF24	0.728384	1.305159e-18	2.261448e-14	1.130724e-15
21	8159876	7925413	AF333388	MT1P2	-0.727274	1.560233e-18	2.703416e-14	1.287341e-15
22	8159876	8151149	NM_006421	ARFGEF1	0.727105	1.602911e-18	2.777364e-14	1.262438e-15
23	8159876	7965123	NM_001143885	PPP1R12A	0.725179	2.179695e-18	3.776758e-14	1.642069e-15
24	8159876	8021496	NM_020854	KIAA1468	0.724821	2.307124e-18	3.997554e-14	1.665648e-15
25	8159876	8113010	NM_001239	CCNH	0.724687	2.356615e-18	4.083307e-14	1.633323e-15
26	8159876	8080685	NM_007159	SLMAP	0.724612	2.384833e-18	4.132199e-14	1.589307e-15
27	8159876	7983744	NM_014547	TMOD3	0.723829	2.699338e-18	4.677142e-14	1.732275e-15
28	8159876	8083183	NM_001080415	SR140	0.723253	2.956182e-18	5.122176e-14	1.829348e-15
29	8159876	8127787	NM_015525	IBTK	0.723022	3.065673e-18	5.311892e-14	1.831687e-15
30	8159876	8144812	NM_006197	PCM1	0.722697	3.226254e-18	5.590131e-14	1.863377e-15
31	8159876	7967420	NM_018183	SBNO1	0.722397	3.381907e-18	5.859830e-14	1.890268e-15
32	8159876	7926283	NM_003675	PRPF18	0.721760	3.737223e-18	6.475486e-14	2.023589e-15
33	8159876	8017235	NM_006380	APPBP2	0.721301	4.015225e-18	6.957181e-14	2.108237e-15
34	8159876	8132417	NM_003718	CDK13	0.720956	4.237520e-18	7.342351e-14	2.159515e-15
35	8159876	8105681	NM_018695	ERBB2IP	0.720559	4.507740e-18	7.810561e-14	2.231589e-15
36	8159876	8020068	NM_015208	ANKRD12	0.719981	4.932124e-18	8.545892e-14	2.373859e-15
37	8159876	7908978	NM_014827	ZC3H11A	0.719920	4.978719e-18	8.626627e-14	2.331521e-15
38	8159876	8105463	NM_022913	GPBP1	0.719884	5.006939e-18	8.675524e-14	2.283033e-15
39	8159876	8160011	NM_001017969	KIAA2026	0.719837	5.043136e-18	8.738241e-14	2.240575e-15
40	8159876	8104944	NM_015384	NIPBL	0.719524	5.294324e-18	9.173476e-14	2.293369e-15
41	8159876	8046604	NM_003659	AGPS	0.719338	5.448799e-18	9.441134e-14	2.302716e-15
42	8159876	7965359	NM_001001323	ATP2B1	0.718981	5.758670e-18	9.978048e-14	2.375726e-15
43	8159876	8021113	NM_145055	C18orf25	0.718665	6.046766e-18	1.047723e-13	2.436565e-15
44	8159876	8105778	NM_181523	PIK3R1	0.718603	6.104875e-18	1.057792e-13	2.404072e-15
45	8159876	8133809	NM_198467	RSBN1L	0.718473	6.228714e-18	1.079249e-13	2.398332e-15
46	8159876	8070341	NM_033656	BRWD1	0.718445	6.255715e-18	1.083928e-13	2.356365e-15
47	8159876	8078569	NM_002078	GOLGA4	0.718151	6.545717e-18	1.134176e-13	2.413141e-15
48	8159876	8146637	NM_152758	YTHDF3	0.717814	6.894785e-18	1.194659e-13	2.488874e-15
49	8159876	8174794	NM_001079872	CUL4B	0.716201	8.828723e-18	1.529753e-13	3.121945e-15
50	8159876	8008493	NM_016424	LUC7L3	0.716157	8.888090e-18	1.540039e-13	3.080079e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation