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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4732 8028563 NM_021107 MRPS12 link to infopage mitochondrial ribosomal protein S12

Fetching correlation data, please wait...
Getting list of correlations for id 4732.
Getting list of p-values for id 4732.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8028563 8003401 NM_000485 APRT link to infopage 0.612968 3.648191e-12 6.321221e-8 6.321221e-8
2 8028563 8004404 NM_178518 TMEM102 link to infopage 0.578742 1.003151e-10 1.738160e-6 8.690800e-7
3 8028563 8156295 NM_024077 SECISBP2 link to infopage -0.575113 1.394264e-10 2.415841e-6 8.052802e-7
4 8028563 8062206 NM_080748 ROMO1 link to infopage 0.573663 1.588459e-10 2.752323e-6 6.880806e-7
5 8028563 8042119 NM_022894 PAPOLG link to infopage -0.565735 3.205118e-10 5.553508e-6 1.110702e-6
6 8028563 8077528 NM_001080517 SETD5 link to infopage -0.556843 6.891094e-10 1.194020e-5 1.990033e-6
7 8028563 8030321 NM_153329 ALDH16A1 link to infopage 0.555483 7.731662e-10 1.339665e-5 1.913807e-6
8 8028563 8100902 NM_032217 ANKRD17 link to infopage -0.555040 8.026119e-10 1.390686e-5 1.738357e-6
9 8028563 8027100 NM_019070 DDX49 link to infopage 0.554612 8.320791e-10 1.441743e-5 1.601937e-6
10 8028563 8001748 NR_002980 SNORA50 link to infopage -0.552104 1.026870e-9 1.779258e-5 1.779258e-6
11 8028563 8073214 NM_001024843 TNRC6B link to infopage -0.550465 1.177099e-9 2.039560e-5 1.854146e-6
12 8028563 8150491 NM_001099412 MYST3 link to infopage -0.549684 1.255861e-9 2.176031e-5 1.813359e-6
13 8028563 7965359 NM_001001323 ATP2B1 link to infopage -0.545331 1.796513e-9 3.112818e-5 2.394475e-6
14 8028563 8077786 NM_001570 IRAK2 link to infopage 0.544294 1.955129e-9 3.387653e-5 2.419752e-6
15 8028563 8027205 NM_015965 NDUFA13 link to infopage 0.544003 2.001875e-9 3.468649e-5 2.312432e-6
16 8028563 7998449 NM_001001410 C16orf42 link to infopage 0.542765 2.213447e-9 3.835240e-5 2.397025e-6
17 8028563 7922432 NM_172071 RC3H1 link to infopage -0.540390 2.680834e-9 4.645081e-5 2.732401e-6
18 8028563 7902203 link to infopage 0.539825 2.805285e-9 4.860718e-5 2.700399e-6
19 8028563 8027770 NM_022006 FXYD7 link to infopage 0.539639 2.847528e-9 4.933912e-5 2.596796e-6
20 8028563 8010719 NM_144999 LRRC45 link to infopage 0.539238 2.940448e-9 5.094915e-5 2.547457e-6
21 8028563 8086810 NM_003074 SMARCC1 link to infopage -0.538860 3.030603e-9 5.251125e-5 2.500536e-6
22 8028563 7918606 NM_005167 PPM1J link to infopage 0.537208 3.457359e-9 5.990566e-5 2.722984e-6
23 8028563 8073422 NM_003216 TEF link to infopage 0.535186 4.058396e-9 7.031982e-5 3.057384e-6
24 8028563 7987772 NM_139265 EHD4 link to infopage 0.534464 4.296364e-9 7.444310e-5 3.101796e-6
25 8028563 8016429 ENST00000384576 link to infopage -0.533088 4.787539e-9 8.295368e-5 3.318147e-6
26 8028563 8105191 NM_024615 PARP8 link to infopage -0.532406 5.050601e-9 8.751177e-5 3.365837e-6
27 8028563 8074842 NM_001130111 FAM108A1 link to infopage 0.531035 5.621359e-9 9.740128e-5 3.607455e-6
28 8028563 8134880 NM_023948 MOSPD3 link to infopage 0.530578 5.824845e-9 1.009271e-4 3.604539e-6
29 8028563 8024273 NM_024407 NDUFS7 link to infopage 0.530359 5.925095e-9 1.026641e-4 3.540142e-6
30 8028563 8074980 NM_000853 GSTT1 link to infopage 0.529815 6.180882e-9 1.070961e-4 3.569872e-6
31 8028563 8079021 NM_001904 CTNNB1 link to infopage -0.529702 6.235267e-9 1.080385e-4 3.485112e-6
32 8028563 8032076 NM_194460 RNF126 link to infopage 0.527622 7.323612e-9 1.268962e-4 3.965507e-6
33 8028563 7986250 NM_001271 CHD2 link to infopage -0.526884 7.752358e-9 1.343251e-4 4.070458e-6
34 8028563 7949746 NM_021173 POLD4 link to infopage 0.525219 8.808186e-9 1.526194e-4 4.488807e-6
35 8028563 7904869 NM_001130111 FAM108A1 link to infopage 0.523761 9.844464e-9 1.705750e-4 4.873572e-6
36 8028563 7904948 NM_001130111 FAM108A1 link to infopage 0.523761 9.844464e-9 1.705750e-4 4.738195e-6
37 8028563 8083429 NM_021038 MBNL1 link to infopage -0.523395 1.012254e-8 1.753932e-4 4.740358e-6
38 8028563 8043283 NM_018433 KDM3A link to infopage -0.522456 1.087052e-8 1.883535e-4 4.956672e-6
39 8028563 8047419 NM_001228 CASP8 link to infopage -0.522337 1.096892e-8 1.900585e-4 4.873296e-6
40 8028563 8128886 ENST00000363652 link to infopage -0.520328 1.276638e-8 2.212030e-4 5.530075e-6
41 8028563 7959549 NM_001002252 ARL6IP4 link to infopage 0.520172 1.291730e-8 2.238181e-4 5.458978e-6
42 8028563 7947540 NM_145803 TRAF6 link to infopage -0.519819 1.326558e-8 2.298528e-4 5.472685e-6
43 8028563 8051464 NM_019024 HEATR5B link to infopage -0.519172 1.392589e-8 2.412939e-4 5.611487e-6
44 8028563 8022174 link to infopage 0.519133 1.396596e-8 2.419882e-4 5.499732e-6
45 8028563 8015900 NM_032376 TMEM101 link to infopage 0.518733 1.439087e-8 2.493507e-4 5.541126e-6
46 8028563 7996423 NM_018378 FBXL8 link to infopage 0.518620 1.451416e-8 2.514869e-4 5.467107e-6
47 8028563 8170288 link to infopage 0.518598 1.453714e-8 2.518850e-4 5.359255e-6
48 8028563 7939818 NM_175732 PTPMT1 link to infopage 0.517855 1.536794e-8 2.662802e-4 5.547505e-6
49 8028563 7897329 NM_138350 THAP3 link to infopage 0.517723 1.552014e-8 2.689175e-4 5.488111e-6
50 8028563 8045846 ENST00000363537 link to infopage -0.517700 1.554723e-8 2.693868e-4 5.387736e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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