[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6726	7935528	NM_003015	SFRP5		secreted frizzled-related protein 5

Fetching correlation data, please wait...
Getting list of correlations for id 6726.
Getting list of p-values for id 6726.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7935528	8098732	NM_033178	DUX4	0.821579	6.924032e-27	1.199727e-22	1.199727e-22
2	7935528	8070933	NM_006657	FTCD	0.817969	1.761613e-26	3.052347e-22	1.526173e-22
3	7935528	8098740	NM_033178	DUX4	0.817964	1.763892e-26	3.056295e-22	1.018765e-22
4	7935528	7949015	NM_001144936	C11orf95	0.813811	5.034420e-26	8.723140e-22	2.180785e-22
5	7935528	7994052	NM_006043	HS3ST2	0.813716	5.154945e-26	8.931974e-22	1.786395e-22
6	7935528	7945688	NR_003512	INS-IGF2	0.811781	8.328615e-26	1.443099e-21	2.405165e-22
7	7935528	8136080	NM_005631	SMO	0.811040	9.991044e-26	1.731148e-21	2.473069e-22
8	7935528	8064676	NM_145762	GFRA4	0.808769	1.737584e-25	3.010712e-21	3.763390e-22
9	7935528	8104122	NM_033178	DUX4	0.805807	3.537202e-25	6.128910e-21	6.809900e-22
10	7935528	7977418	NM_001134875	C14orf80	0.802745	7.281191e-25	1.261612e-20	1.261612e-21
11	7935528	8006562	NM_033315	RASL10B	0.798596	1.898438e-24	3.289424e-20	2.990385e-21
12	7935528	8010696	NM_148896	NPB	0.798483	1.948022e-24	3.375339e-20	2.812782e-21
13	7935528	8019693	NM_148896	NPB	0.798483	1.948022e-24	3.375339e-20	2.596414e-21
14	7935528	8076747	AK123383	LOC642648	0.798448	1.963558e-24	3.402257e-20	2.430184e-21
15	7935528	8048460	NM_003936	CDK5R2	0.796563	3.011916e-24	5.218747e-20	3.479165e-21
16	7935528	7977033	NM_030943	AMN	0.794430	4.860257e-24	8.421367e-20	5.263355e-21
17	7935528	8049942	NM_080741	NEU4	0.794322	4.978767e-24	8.626709e-20	5.074535e-21
18	7935528	7992269	ENST00000301714		0.793788	5.607104e-24	9.715430e-20	5.397461e-21
19	7935528	8048205	NM_000597	IGFBP2	0.790722	1.102183e-23	1.909752e-19	1.005133e-20
20	7935528	7911750	NM_001010926	HES5	0.790591	1.134071e-23	1.965005e-19	9.825024e-21
21	7935528	8073449	NM_014460	CSDC2	0.790074	1.269370e-23	2.199438e-19	1.047351e-20
22	7935528	8062948	NM_014276	RBPJL	0.789997	1.290976e-23	2.236874e-19	1.016761e-20
23	7935528	8027213	NM_198537	YJEFN3	0.789754	1.361015e-23	2.358231e-19	1.025318e-20
24	7935528	7949843	NM_016366	CABP2	0.789474	1.446395e-23	2.506169e-19	1.044237e-20
25	7935528	7919582	XR_039086	LOC100133075	0.789141	1.554770e-23	2.693950e-19	1.077580e-20
26	7935528	7896761	NM_152486	SAMD11	0.789022	1.595214e-23	2.764027e-19	1.063087e-20
27	7935528	7940377	NM_017870	TMEM132A	0.788485	1.791703e-23	3.104483e-19	1.149809e-20
28	7935528	8114550	NM_004883	NRG2	0.787672	2.134456e-23	3.698371e-19	1.320847e-20
29	7935528	7947928	NM_031909	C1QTNF4	0.787464	2.231971e-23	3.867336e-19	1.333564e-20
30	7935528	8060505	NM_001110514	EBF4	0.786332	2.844040e-23	4.927869e-19	1.642623e-20
31	7935528	8137228	NM_173680	ZNF775	0.786043	3.025048e-23	5.241500e-19	1.690806e-20
32	7935528	8024048	NM_002777	PRTN3	0.785846	3.154626e-23	5.466020e-19	1.708131e-20
33	7935528	7937560	NM_002457	MUC2	0.784970	3.799626e-23	6.583612e-19	1.995034e-20
34	7935528	7958577	NM_032829	C12orf34	0.784880	3.872598e-23	6.710051e-19	1.973544e-20
35	7935528	7991939	NM_145294	WDR90	0.784125	4.543547e-23	7.872604e-19	2.249315e-20
36	7935528	8133704	NM_001110199	SRRM3	0.783867	4.796921e-23	8.311626e-19	2.308785e-20
37	7935528	7967969	NM_138284	IL17D	0.783566	5.110976e-23	8.855788e-19	2.393456e-20
38	7935528	8035249	NM_005234	NR2F6	0.782653	6.189471e-23	1.072450e-18	2.822236e-20
39	7935528	7911435	NM_001014980	FAM132A	0.781754	7.468348e-23	1.294041e-18	3.318053e-20
40	7935528	8038109	NM_017708	FAM83E	0.781175	8.423188e-23	1.459486e-18	3.648714e-20
41	7935528	8032312	NM_138813	ATP8B3	0.780663	9.366545e-23	1.622941e-18	3.958393e-20
42	7935528	8065327	NM_033176	NKX2-4	0.779900	1.096857e-22	1.900524e-18	4.525057e-20
43	7935528	8060609	ENST00000410721		0.779896	1.097771e-22	1.902109e-18	4.423508e-20
44	7935528	8118804	NM_020804	PACSIN1	0.779364	1.224825e-22	2.122255e-18	4.823306e-20
45	7935528	8067409	NM_005560	LAMA5	0.779058	1.304219e-22	2.259820e-18	5.021823e-20
46	7935528	8098512	NM_021942	C4orf41	-0.778745	1.390872e-22	2.409964e-18	5.239052e-20
47	7935528	8008228	NM_138281	DLX4	0.778330	1.514233e-22	2.623712e-18	5.582366e-20
48	7935528	8104268	NM_001003841	SLC6A19	0.778287	1.527696e-22	2.647040e-18	5.514666e-20
49	7935528	8024605	NM_021938	CELF5	0.778053	1.602571e-22	2.776774e-18	5.666886e-20
50	7935528	8004763	NM_000180	GUCY2D	0.777944	1.638657e-22	2.839300e-18	5.678600e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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