[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4557	7960177	NM_003044	SLC6A12		solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12

Fetching correlation data, please wait...
Getting list of correlations for id 4557.
Getting list of p-values for id 4557.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7960177	7972557	NM_004951	GPR183	-0.622829	1.301803e-12	2.255634e-8	2.255634e-8
2	7960177	8163086	NM_032012	C9orf5	-0.606227	7.230996e-12	1.252915e-7	6.264573e-8
3	7960177	8002711	ENST00000443762		-0.601817	1.121556e-11	1.943319e-7	6.477731e-8
4	7960177	7942261	NM_005553	KRTAP5-9	0.590599	3.325100e-11	5.761401e-7	1.440350e-7
5	7960177	8016414	NM_003726	SKAP1	-0.584564	5.865555e-11	1.016325e-6	2.032649e-7
6	7960177	7934074	NM_001057	TACR2	0.572638	1.741226e-10	3.017022e-6	5.028369e-7
7	7960177	7981078	NM_001080451	SERPINA11	0.569711	2.259211e-10	3.914535e-6	5.592192e-7
8	7960177	8151644	NM_016033	FAM82B	-0.567464	2.754423e-10	4.772589e-6	5.965736e-7
9	7960177	8103906	AK097110	LOC728175	0.566564	2.980815e-10	5.164858e-6	5.738731e-7
10	7960177	8027854	NM_005303	FFAR1	0.562496	4.247021e-10	7.358813e-6	7.358813e-7
11	7960177	7949340	NM_138456	BATF2	0.562027	4.422288e-10	7.662498e-6	6.965908e-7
12	7960177	8103979	NM_020827	KIAA1430	-0.559589	5.453475e-10	9.449237e-6	7.874364e-7
13	7960177	8098769	NM_032219	MFSD7	0.557773	6.367536e-10	1.103303e-5	8.486946e-7
14	7960177	8115756	NM_004137	KCNMB1	0.557405	6.570091e-10	1.138400e-5	8.131427e-7
15	7960177	8116929	NM_002948	RPL15	-0.557021	6.787591e-10	1.176086e-5	7.840573e-7
16	7960177	8132589	ENST00000275524		-0.555507	7.716126e-10	1.336973e-5	8.356082e-7
17	7960177	8162247	AF289567		0.554427	8.451870e-10	1.464456e-5	8.614444e-7
18	7960177	7964828	GENSCAN00000052941		-0.551596	1.071309e-9	1.856258e-5	1.031254e-6
19	7960177	8153363	NM_000497	CYP11B1	0.550937	1.131769e-9	1.961017e-5	1.032114e-6
20	7960177	8064388	NM_033409	C20orf54	0.550119	1.211367e-9	2.098936e-5	1.049468e-6
21	7960177	8058614	NM_006055	LANCL1	-0.548180	1.421997e-9	2.463895e-5	1.173283e-6
22	7960177	7976848	hsa-mir-453		0.547997	1.443650e-9	2.501412e-5	1.137005e-6
23	7960177	7931930	NM_006257	PRKCQ	-0.545833	1.724302e-9	2.987697e-5	1.298999e-6
24	7960177	7925504	NM_001004343	MAP1LC3C	0.545192	1.817102e-9	3.148493e-5	1.311872e-6
25	7960177	8160151	NM_178566	ZDHHC21	-0.543309	2.118043e-9	3.669934e-5	1.467973e-6
26	7960177	8144685			0.541379	2.475774e-9	4.289773e-5	1.649913e-6
27	7960177	7918444	NM_005549	KCNA10	0.540938	2.565323e-9	4.444936e-5	1.646273e-6
28	7960177	8034151	NM_020812	DOCK6	0.540300	2.700267e-9	4.678753e-5	1.670983e-6
29	7960177	7989365	NM_134260	RORA	-0.539810	2.808711e-9	4.866654e-5	1.678156e-6
30	7960177	7981976	NR_003329	SNORD116-14	-0.539189	2.952022e-9	5.114968e-5	1.704989e-6
31	7960177	8060765	NM_012409	PRND	0.538535	3.110571e-9	5.389686e-5	1.738608e-6
32	7960177	8072636	NM_001008494	ISX	0.534704	4.215826e-9	7.304761e-5	2.282738e-6
33	7960177	7963880	NM_001144996	ITGA7	0.533571	4.609242e-9	7.986434e-5	2.420131e-6
34	7960177	8081564	NM_198196	CD96	-0.533440	4.657139e-9	8.069425e-5	2.373360e-6
35	7960177	8175802	NM_080701	TREX2	0.532281	5.100129e-9	8.836993e-5	2.524855e-6
36	7960177	8094743	NM_004310	RHOH	-0.531664	5.351936e-9	9.273300e-5	2.575917e-6
37	7960177	8019136	BC064483	C17orf56	0.531388	5.468797e-9	9.475784e-5	2.561023e-6
38	7960177	8035842	NM_003430	ZNF91	-0.528933	6.618665e-9	1.146816e-4	3.017937e-6
39	7960177	8145922	NM_015214	DDHD2	-0.528482	6.853555e-9	1.187516e-4	3.044912e-6
40	7960177	8114546	ENST00000384293		0.528382	6.906762e-9	1.196735e-4	2.991836e-6
41	7960177	7947138	NM_022725	FANCF	-0.526321	8.094576e-9	1.402547e-4	3.420847e-6
42	7960177	7926609	NM_005180	BMI1	-0.525867	8.381804e-9	1.452315e-4	3.457893e-6
43	7960177	7985418	ENST00000342039		0.524377	9.393278e-9	1.627573e-4	3.785054e-6
44	7960177	7985459	ENST00000342039		0.524377	9.393278e-9	1.627573e-4	3.699030e-6
45	7960177	7990928	ENST00000342039		0.524377	9.393278e-9	1.627573e-4	3.616829e-6
46	7960177	7952339	NR_001453	SNORD14C	-0.523836	9.788752e-9	1.696097e-4	3.687168e-6
47	7960177	8084478	BC037299	FAM131A	0.523459	1.007340e-8	1.745419e-4	3.713657e-6
48	7960177	7919436	NM_178230	PPIAL4A	-0.522505	1.083022e-8	1.876553e-4	3.909485e-6
49	7960177	7987675	NM_015540	RPAP1	0.521807	1.141858e-8	1.978497e-4	4.037750e-6
50	7960177	8089040	NM_001042533	MINA	-0.521517	1.167177e-8	2.022368e-4	4.044736e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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