[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2857	8166289	NM_001037343	CDKL5		cyclin-dependent kinase-like 5

Fetching correlation data, please wait...
Getting list of correlations for id 2857.
Getting list of p-values for id 2857.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8166289	8064464	NM_178460	SIRPD	0.744100	9.464853e-20	1.639975e-15	1.639975e-15
2	8166289	8166243	NM_004726	REPS2	0.739202	2.188029e-19	3.791198e-15	1.895599e-15
3	8166289	7940191	NM_004177	STX3	0.725096	2.208702e-18	3.827019e-14	1.275673e-14
4	8166289	8128123	NM_021244	RRAGD	0.707384	3.312714e-17	5.739939e-13	1.434985e-13
5	8166289	7929511	NM_001776	ENTPD1	0.693599	2.380760e-16	4.125143e-12	8.250285e-13
6	8166289	7965606	NM_002108	HAL	0.693388	2.451568e-16	4.247831e-12	7.079719e-13
7	8166289	7968417	NM_023037	FRY	0.691880	3.020928e-16	5.234362e-12	7.477660e-13
8	8166289	7957570	NM_005761	PLXNC1	0.690294	3.757955e-16	6.511409e-12	8.139261e-13
9	8166289	8022251	NM_001042388	PPP4R1	0.689436	4.226768e-16	7.323721e-12	8.137468e-13
10	8166289	8042503	NM_002357	MXD1	0.685335	7.371416e-16	1.277245e-11	1.277245e-12
11	8166289	8101511	NM_014991	WDFY3	0.684909	7.805631e-16	1.352482e-11	1.229529e-12
12	8166289	7980005	NM_001005743	NUMB	0.684761	7.961821e-16	1.379545e-11	1.149621e-12
13	8166289	8151756	NM_018710	TMEM55A	0.683200	9.811685e-16	1.700071e-11	1.307747e-12
14	8166289	8096675	NM_001127208	TET2	0.680248	1.451241e-15	2.514566e-11	1.796118e-12
15	8166289	8082431	NM_004637	RAB7A	0.679938	1.511670e-15	2.619270e-11	1.746180e-12
16	8166289	7922773	NM_000433	NCF2	0.675817	2.589420e-15	4.486688e-11	2.804180e-12
17	8166289	8109999	NM_001031711	ERGIC1	0.675436	2.720342e-15	4.713537e-11	2.772669e-12
18	8166289	7954631	NM_018099	FAR2	0.675322	2.760946e-15	4.783891e-11	2.657717e-12
19	8166289	8157945	NM_001099270	ZBTB34	0.673089	3.680254e-15	6.376776e-11	3.356198e-12
20	8166289	8100798	NM_014465	SULT1B1	0.672624	3.906079e-15	6.768062e-11	3.384031e-12
21	8166289	8020110	NM_006868	RAB31	0.671704	4.392932e-15	7.611634e-11	3.624588e-12
22	8166289	8110055	NM_030627	CPEB4	0.669030	6.166723e-15	1.068508e-10	4.856855e-12
23	8166289	7950578	NM_001128620	PAK1	0.667450	7.523147e-15	1.303536e-10	5.667546e-12
24	8166289	8124088	NM_022113	KIF13A	0.665873	9.162585e-15	1.587601e-10	6.615004e-12
25	8166289	8145365	NM_024940	DOCK5	0.665751	9.303010e-15	1.611933e-10	6.447730e-12
26	8166289	7958600	NM_033121	ANKRD13A	0.664079	1.145079e-14	1.984078e-10	7.631069e-12
27	8166289	8108873	NM_015071	ARHGAP26	0.664009	1.154945e-14	2.001173e-10	7.411753e-12
28	8166289	8149264	NM_024607	PPP1R3B	0.663989	1.157818e-14	2.006151e-10	7.164826e-12
29	8166289	7922976	NM_000963	PTGS2	0.663572	1.219079e-14	2.112298e-10	7.283786e-12
30	8166289	8064790	NM_014737	RASSF2	0.663498	1.230389e-14	2.131896e-10	7.106319e-12
31	8166289	8144931	NM_001693	ATP6V1B2	0.662304	1.425348e-14	2.469700e-10	7.966774e-12
32	8166289	7935403	NM_032900	ARHGAP19	0.661074	1.657533e-14	2.872007e-10	8.975021e-12
33	8166289	7999476			0.659213	2.079894e-14	3.603832e-10	1.092070e-11
34	8166289	8072279	NM_153050	MTMR3	0.658973	2.141505e-14	3.710586e-10	1.091349e-11
35	8166289	7965156	NM_004664	LIN7A	0.658625	2.233946e-14	3.870757e-10	1.105931e-11
36	8166289	7983910	NM_020980	AQP9	0.658230	2.343387e-14	4.060387e-10	1.127885e-11
37	8166289	8016745	NM_001130528	SPAG9	0.658169	2.360829e-14	4.090609e-10	1.105570e-11
38	8166289	7950838	NM_007166	PICALM	0.657423	2.583666e-14	4.476718e-10	1.178084e-11
39	8166289	7914603	NM_153341	RNF19B	0.657317	2.616874e-14	4.534258e-10	1.162630e-11
40	8166289	8098121	NM_014247	RAPGEF2	0.656859	2.765359e-14	4.791537e-10	1.197884e-11
41	8166289	8063873	NM_144498	OSBPL2	0.656752	2.801346e-14	4.853892e-10	1.183876e-11
42	8166289	7979085	NM_002863	PYGL	0.656197	2.994563e-14	5.188679e-10	1.235400e-11
43	8166289	8102006	NM_005908	MANBA	0.655476	3.265293e-14	5.657774e-10	1.315761e-11
44	8166289	8040552	NM_147223	NCOA1	0.655335	3.320991e-14	5.754282e-10	1.307791e-11
45	8166289	7933723	NM_152230	IPMK	0.655132	3.402479e-14	5.895475e-10	1.310106e-11
46	8166289	7932796	NM_021738	SVIL	0.652577	4.612853e-14	7.992691e-10	1.737541e-11
47	8166289	8093145	NM_032898	C3orf34	0.650553	5.858011e-14	1.015018e-9	2.159612e-11
48	8166289	8082827	NM_025180	CEP63	0.649651	6.512870e-14	1.128485e-9	2.351010e-11
49	8166289	7979044	NM_020921	NIN	0.649279	6.803382e-14	1.178822e-9	2.405759e-11
50	8166289	7974533	NM_021255	PELI2	0.649225	6.846170e-14	1.186236e-9	2.372472e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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