[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5820	7941148	NM_003273	TM7SF2		transmembrane 7 superfamily member 2

Fetching correlation data, please wait...
Getting list of correlations for id 5820.
Getting list of p-values for id 5820.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7941148	8066009	NM_184234	RBM39	-0.797152	2.636177e-24	4.567704e-20	4.567704e-20
2	7941148	7947928	NM_031909	C1QTNF4	0.795945	3.461523e-24	5.997781e-20	2.998890e-20
3	7941148	8044686	NM_005721	ACTR3	-0.776048	2.408899e-22	4.173899e-18	1.391300e-18
4	7941148	8047419	NM_001228	CASP8	-0.770968	6.640406e-22	1.150583e-17	2.876458e-18
5	7941148	8169541	NM_144658	DOCK11	-0.767254	1.371003e-21	2.375537e-17	4.751073e-18
6	7941148	7964937	NM_144982	ZFC3H1	-0.764606	2.280131e-21	3.950782e-17	6.584637e-18
7	7941148	7925201	NM_016374	ARID4B	-0.760612	4.850935e-21	8.405215e-17	1.200745e-17
8	7941148	8008493	NM_016424	LUC7L3	-0.759483	5.988331e-21	1.037598e-16	1.296998e-17
9	7941148	7908553	NM_002838	PTPRC	-0.757039	9.412738e-21	1.630945e-16	1.812161e-17
10	7941148	8104944	NM_015384	NIPBL	-0.755989	1.141124e-20	1.977225e-16	1.977225e-17
11	7941148	8058127	NR_027856	CLK1	-0.752147	2.290530e-20	3.968800e-16	3.608000e-17
12	7941148	8019885	NM_015295	SMCHD1	-0.751747	2.461037e-20	4.264239e-16	3.553532e-17
13	7941148	8050719	NM_006277	ITSN2	-0.748730	4.211517e-20	7.297296e-16	5.613305e-17
14	7941148	7970907	NM_014887	N4BP2L2	-0.748322	4.526282e-20	7.842688e-16	5.601920e-17
15	7941148	8164328	NM_173492	PIP5KL1	0.745304	7.680213e-20	1.330751e-15	8.871670e-17
16	7941148	7922889	NM_006469	IVNS1ABP	-0.745109	7.945313e-20	1.376684e-15	8.604278e-17
17	7941148	8097148	NM_015312	KIAA1109	-0.744603	8.674883e-20	1.503097e-15	8.841747e-17
18	7941148	8098721	ENST00000362702		0.744410	8.970007e-20	1.554233e-15	8.634629e-17
19	7941148	7908978	NM_014827	ZC3H11A	-0.742661	1.212956e-19	2.101689e-15	1.106152e-16
20	7941148	7922912	NM_003292	TPR	-0.742650	1.215415e-19	2.105949e-15	1.052974e-16
21	7941148	8033662	NM_178525	ACTL9	0.742351	1.279368e-19	2.216761e-15	1.055601e-16
22	7941148	8174794	NM_001079872	CUL4B	-0.742281	1.294789e-19	2.243481e-15	1.019764e-16
23	7941148	7925565	NM_031844	HNRNPU	-0.741812	1.403141e-19	2.431222e-15	1.057053e-16
24	7941148	8120441	NM_015153	PHF3	-0.741185	1.561880e-19	2.706270e-15	1.127613e-16
25	7941148	8151149	NM_006421	ARFGEF1	-0.740944	1.627442e-19	2.819869e-15	1.127948e-16
26	7941148	8099410	NM_148894	BOD1L	-0.740684	1.701265e-19	2.947783e-15	1.133763e-16
27	7941148	8105191	NM_024615	PARP8	-0.740266	1.826780e-19	3.165262e-15	1.172319e-16
28	7941148	7925257	NM_000081	LYST	-0.740202	1.846844e-19	3.200027e-15	1.142867e-16
29	7941148	8128394	NM_032870	SFRS18	-0.739987	1.915273e-19	3.318593e-15	1.144343e-16
30	7941148	7983744	NM_014547	TMOD3	-0.739768	1.987930e-19	3.444486e-15	1.148162e-16
31	7941148	8135277	NM_182931	MLL5	-0.739135	2.212791e-19	3.834103e-15	1.236807e-16
32	7941148	8098512	NM_021942	C4orf41	-0.738978	2.272376e-19	3.937346e-15	1.230421e-16
33	7941148	8088700	NM_007114	TMF1	-0.738803	2.340464e-19	4.055322e-15	1.228886e-16
34	7941148	8058024	NM_012433	SF3B1	-0.738024	2.669125e-19	4.624793e-15	1.360233e-16
35	7941148	8164701	NM_015046	SETX	-0.737980	2.688810e-19	4.658901e-15	1.331115e-16
36	7941148	7897280	NM_001024598	HES3	0.737715	2.811288e-19	4.871119e-15	1.353089e-16
37	7941148	7903541	NM_007269	STXBP3	-0.737550	2.890227e-19	5.007896e-15	1.353486e-16
38	7941148	8162147	NM_024617	ZCCHC6	-0.737399	2.964495e-19	5.136581e-15	1.351732e-16
39	7941148	8092933	NM_012287	ACAP2	-0.737391	2.968258e-19	5.143101e-15	1.318744e-16
40	7941148	8175528	NM_005634	SOX3	0.737331	2.998517e-19	5.195531e-15	1.298883e-16
41	7941148	7950838	NM_007166	PICALM	-0.737025	3.156304e-19	5.468928e-15	1.333885e-16
42	7941148	8007112	NM_001146041	KRTAP4-9	0.735752	3.903776e-19	6.764073e-15	1.610494e-16
43	7941148	7976598	NM_032632	PAPOLA	-0.735293	4.213531e-19	7.300786e-15	1.697857e-16
44	7941148	8068238	NM_207585	IFNAR2	-0.735205	4.275785e-19	7.408653e-15	1.683785e-16
45	7941148	8080685	NM_007159	SLMAP	-0.734815	4.561782e-19	7.904200e-15	1.756489e-16
46	7941148	8045563	NM_018460	ARHGAP15	-0.734360	4.919072e-19	8.523276e-15	1.852886e-16
47	7941148	8022767	NM_014939	KIAA1012	-0.734073	5.157998e-19	8.937264e-15	1.901545e-16
48	7941148	8091658	NM_020307	CCNL1	-0.733699	5.486417e-19	9.506316e-15	1.980482e-16
49	7941148	8116227	NM_020666	CLK4	-0.733428	5.737812e-19	9.941907e-15	2.028961e-16
50	7941148	7998668	NM_144603	NOXO1	0.732989	6.167795e-19	1.068694e-14	2.137388e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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