[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
6048	8125091	NM_006295	VARS		valyl-tRNA synthetase
6049	8178609	NM_006295	VARS		valyl-tRNA synthetase

Fetching correlation data, please wait...
Getting list of correlations for id 6048.
Getting list of p-values for id 6048.
1 of 2 done.
Getting list of correlations for id 6049.
Getting list of p-values for id 6049.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.174 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178609	8125091	NM_006295	VARS	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8125091	8178609	NM_006295	VARS	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178609	8076365	NM_015704	PPPDE2	0.600510	1.275752e-11	4.420991e-7	1.473664e-7
4	8125091	8076365	NM_015704	PPPDE2	0.600510	1.275752e-11	4.420991e-7	1.105248e-7
5	8125091	8141688	NM_001084	PLOD3	0.573104	1.670057e-10	5.787415e-6	1.157483e-6
6	8178609	8141688	NM_001084	PLOD3	0.573104	1.670057e-10	5.787415e-6	9.645692e-7
7	8125091	8137225	NM_013400	REPIN1	0.556207	7.272989e-10	2.520382e-5	3.600545e-6
8	8178609	8137225	NM_013400	REPIN1	0.556207	7.272989e-10	2.520382e-5	3.150477e-6
9	8125091	7998510	NM_001287	CLCN7	0.549606	1.263999e-9	4.380263e-5	4.866958e-6
10	8178609	7998510	NM_001287	CLCN7	0.549606	1.263999e-9	4.380263e-5	4.380263e-6
11	8178609	8032365	NM_031918	KLF16	0.547059	1.559531e-9	5.404397e-5	4.913088e-6
12	8125091	8032365	NM_031918	KLF16	0.547059	1.559531e-9	5.404397e-5	4.503664e-6
13	8178609	7998267	NM_001005920	JMJD8	0.545625	1.753963e-9	6.078183e-5	4.675525e-6
14	8125091	7998267	NM_001005920	JMJD8	0.545625	1.753963e-9	6.078183e-5	4.341559e-6
15	8178609	8060370	NM_031424	FAM110A	0.542697	2.225661e-9	7.712806e-5	5.141871e-6
16	8125091	8060370	NM_031424	FAM110A	0.542697	2.225661e-9	7.712806e-5	4.820504e-6
17	8178609	7896917	NM_001029885	GLTPD1	0.540984	2.555877e-9	8.857135e-5	5.210079e-6
18	8125091	7896917	NM_001029885	GLTPD1	0.540984	2.555877e-9	8.857135e-5	4.920630e-6
19	8125091	8060705	NM_020746	MAVS	0.540268	2.707269e-9	9.381770e-5	4.937773e-6
20	8178609	8060705	NM_020746	MAVS	0.540268	2.707269e-9	9.381770e-5	4.690885e-6
21	8178609	8012079	NM_004422	DVL2	0.533840	4.512918e-9	1.563907e-4	7.447174e-6
22	8125091	8012079	NM_004422	DVL2	0.533840	4.512918e-9	1.563907e-4	7.108666e-6
23	8178609	8014871	NM_033419	PGAP3	0.531868	5.267572e-9	1.825425e-4	7.936628e-6
24	8125091	8014871	NM_033419	PGAP3	0.531868	5.267572e-9	1.825425e-4	7.605936e-6
25	8125091	7949172	NM_004579	MAP4K2	0.530584	5.822362e-9	2.017681e-4	8.070726e-6
26	8178609	7949172	NM_004579	MAP4K2	0.530584	5.822362e-9	2.017681e-4	7.760313e-6
27	8178609	8049689	NM_018226	RNPEPL1	0.525547	8.589804e-9	2.976711e-4	1.102485e-5
28	8125091	8049689	NM_018226	RNPEPL1	0.525547	8.589804e-9	2.976711e-4	1.063111e-5
29	8125091	7949836	NM_005851	CDK2AP2	0.524931	9.004427e-9	3.120394e-4	1.075998e-5
30	8178609	7949836	NM_005851	CDK2AP2	0.524931	9.004427e-9	3.120394e-4	1.040131e-5
31	8125091	7899043	NM_020451	SEPN1	0.523306	1.019152e-8	3.531770e-4	1.139281e-5
32	8178609	7899043	NM_020451	SEPN1	0.523306	1.019152e-8	3.531770e-4	1.103678e-5
33	8125091	8032076	NM_194460	RNF126	0.522143	1.113197e-8	3.857674e-4	1.168992e-5
34	8178609	8032076	NM_194460	RNF126	0.522143	1.113197e-8	3.857674e-4	1.134610e-5
35	8125091	8032650	NM_012398	PIP5K1C	0.521079	1.206396e-8	4.180645e-4	1.194470e-5
36	8178609	8032650	NM_012398	PIP5K1C	0.521079	1.206396e-8	4.180645e-4	1.161290e-5
37	8125091	7899870	NM_152493	ZNF362	0.520506	1.259656e-8	4.365211e-4	1.179787e-5
38	8178609	7899870	NM_152493	ZNF362	0.520506	1.259656e-8	4.365211e-4	1.148740e-5
39	8178609	8159654	NM_015456	COBRA1	0.519773	1.331066e-8	4.612677e-4	1.182738e-5
40	8125091	8159654	NM_015456	COBRA1	0.519773	1.331066e-8	4.612677e-4	1.153169e-5
41	8178609	7924868	NM_145214	TRIM11	0.518590	1.454574e-8	5.040681e-4	1.229435e-5
42	8125091	7924868	NM_145214	TRIM11	0.518590	1.454574e-8	5.040681e-4	1.200162e-5
43	8125091	8023344	NM_001101654	CXXC1	0.517878	1.534232e-8	5.316728e-4	1.236448e-5
44	8178609	8023344	NM_001101654	CXXC1	0.517878	1.534232e-8	5.316728e-4	1.208347e-5
45	8178609	8175977	NM_001569	IRAK1	0.516506	1.699388e-8	5.889059e-4	1.308680e-5
46	8125091	8175977	NM_001569	IRAK1	0.516506	1.699388e-8	5.889059e-4	1.280230e-5
47	8125091	8017393	NM_030576	LIMD2	0.511179	2.516903e-8	8.722076e-4	1.855761e-5
48	8178609	8017393	NM_030576	LIMD2	0.511179	2.516903e-8	8.722076e-4	1.817099e-5
49	8178609	8007637	NM_001466	FZD2	0.507111	3.382173e-8	1.172058e-3	2.391955e-5
50	8125091	8007637	NM_001466	FZD2	0.507111	3.382173e-8	1.172058e-3	2.344116e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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