[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6610	8085475	NM_004625	WNT7A		wingless-type MMTV integration site family, member 7A

Fetching correlation data, please wait...
Getting list of correlations for id 6610.
Getting list of p-values for id 6610.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8085475	8050190	NM_003183	ADAM17	-0.692523	2.764028e-16	4.789232e-12	4.789232e-12
2	8085475	8042291	NM_203437	AFTPH	-0.686793	6.054763e-16	1.049109e-11	5.245544e-12
3	8085475	8087380	NM_003363	USP4	-0.685665	7.051514e-16	1.221816e-11	4.072719e-12
4	8085475	7900009	NM_017629	EIF2C4	-0.684428	8.325527e-16	1.442564e-11	3.606410e-12
5	8085475	8007992	NM_002265	KPNB1	-0.683424	9.522960e-16	1.650043e-11	3.300086e-12
6	8085475	7931097	NM_002775	HTRA1	0.681703	1.197302e-15	2.074565e-11	3.457608e-12
7	8085475	8162147	NM_024617	ZCCHC6	-0.678785	1.758997e-15	3.047814e-11	4.354020e-12
8	8085475	7930276	NM_014720	SLK	-0.677367	2.117088e-15	3.668279e-11	4.585349e-12
9	8085475	7922823	NM_025191	EDEM3	-0.676770	2.288220e-15	3.964799e-11	4.405332e-12
10	8085475	8042416	NM_014882	ARHGAP25	-0.675043	2.862349e-15	4.959592e-11	4.959592e-12
11	8085475	8017212	NM_032582	USP32	-0.670960	4.829491e-15	8.368059e-11	7.607326e-12
12	8085475	8153486	NM_001162914	LOC100130274	0.664003	1.155906e-14	2.002839e-10	1.669032e-11
13	8085475	8076007	NM_025045	BAIAP2L2	0.663162	1.282467e-14	2.222131e-10	1.709332e-11
14	8085475	7922432	NM_172071	RC3H1	-0.662462	1.397945e-14	2.422219e-10	1.730156e-11
15	8085475	7955376	NM_173602	DIP2B	-0.662362	1.415209e-14	2.452133e-10	1.634755e-11
16	8085475	7931519	NM_152643	KNDC1	0.661254	1.621522e-14	2.809612e-10	1.756007e-11
17	8085475	8052024	NM_025133	FBXO11	-0.660905	1.692289e-14	2.932228e-10	1.724840e-11
18	8085475	7965359	NM_001001323	ATP2B1	-0.659827	1.930204e-14	3.344464e-10	1.858035e-11
19	8085475	8052680	NM_004161	RAB1A	-0.659816	1.932896e-14	3.349129e-10	1.762700e-11
20	8085475	7996516	NM_015432	PLEKHG4	0.656468	2.898477e-14	5.022191e-10	2.511095e-11
21	8085475	8037785	NM_033258	GNG8	0.656403	2.921283e-14	5.061707e-10	2.410337e-11
22	8085475	8082289	NM_152889	CHST13	0.656323	2.949567e-14	5.110715e-10	2.323052e-11
23	8085475	8023984	NM_001194	HCN2	0.655839	3.126283e-14	5.416910e-10	2.355178e-11
24	8085475	7992271	NM_016111	TELO2	0.655478	3.264307e-14	5.656065e-10	2.356694e-11
25	8085475	7913814	NM_015484	SYF2	-0.653479	4.144243e-14	7.180731e-10	2.872292e-11
26	8085475	8142971	NM_138693	KLF14	0.652882	4.448880e-14	7.708575e-10	2.964836e-11
27	8085475	8128886	ENST00000363652		-0.652171	4.840316e-14	8.386815e-10	3.106228e-11
28	8085475	8004867	NM_001025579	NDEL1	-0.651267	5.385970e-14	9.332271e-10	3.332954e-11
29	8085475	8067652	NM_001958	EEF1A2	0.650209	6.099822e-14	1.056916e-9	3.644538e-11
30	8085475	8157947	NM_001099270	ZBTB34	-0.650180	6.121049e-14	1.060594e-9	3.535314e-11
31	8085475	8087374	NM_198562	C3orf62	-0.649107	6.941718e-14	1.202792e-9	3.879973e-11
32	8085475	8064438	NM_016143	NSFL1C	-0.648208	7.710204e-14	1.335947e-9	4.174835e-11
33	8085475	7908003	NM_030769	NPL	-0.647985	7.913477e-14	1.371168e-9	4.155055e-11
34	8085475	7989037	NM_004748	CCPG1	-0.647902	7.990221e-14	1.384466e-9	4.071957e-11
35	8085475	8060660	NM_052970	HSPA12B	0.647423	8.448481e-14	1.463868e-9	4.182481e-11
36	8085475	8013112	NM_016084	RASD1	0.647067	8.804641e-14	1.525580e-9	4.237723e-11
37	8085475	8098942	NM_005663	WHSC2	0.645982	9.985033e-14	1.730107e-9	4.675964e-11
38	8085475	7911038	NM_205768	ZNF238	-0.644989	1.119735e-13	1.940164e-9	5.105696e-11
39	8085475	8124088	NM_022113	KIF13A	-0.644592	1.172200e-13	2.031070e-9	5.207872e-11
40	8085475	8114068	NM_133456	SHROOM1	0.643348	1.352177e-13	2.342918e-9	5.857294e-11
41	8085475	8101971	NM_000944	PPP3CA	-0.642770	1.444645e-13	2.503137e-9	6.105211e-11
42	8085475	8037728	NM_001012643	MYPOP	0.641528	1.664346e-13	2.883812e-9	6.866218e-11
43	8085475	8090277	NM_022776	OSBPL11	-0.640964	1.774651e-13	3.074938e-9	7.151019e-11
44	8085475	7987048	NM_017762	MTMR10	-0.640656	1.837796e-13	3.184349e-9	7.237158e-11
45	8085475	7954810	NM_198578	LRRK2	-0.640296	1.914206e-13	3.316745e-9	7.370543e-11
46	8085475	7915160	NM_022157	RRAGC	-0.640178	1.940076e-13	3.361569e-9	7.307759e-11
47	8085475	8067521	NM_080473	GATA5	0.639373	2.124856e-13	3.681738e-9	7.833486e-11
48	8085475	8022882	NM_006965	ZNF24	-0.637522	2.616714e-13	4.533981e-9	9.445794e-11
49	8085475	8100714	NM_001031732	YTHDC1	-0.637159	2.725329e-13	4.722178e-9	9.637098e-11
50	8085475	8080162	NM_015407	ABHD14A	0.636424	2.958863e-13	5.126823e-9	1.025365e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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