[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3034	8172369	NM_006962	ZNF182		zinc finger protein 182

Fetching correlation data, please wait...
Getting list of correlations for id 3034.
Getting list of p-values for id 3034.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8172369	7962240			-0.555477	7.735864e-10	1.340393e-5	1.340393e-5
2	8172369	8072407	NR_002323	TUG1	0.516074	1.754789e-8	3.040524e-4	1.520262e-4
3	8172369	7918847	NM_001102396	SIKE1	0.514016	2.043604e-8	3.540952e-4	1.180317e-4
4	8172369	8014063	NM_006495	EVI2B	0.510128	2.717601e-8	4.708787e-4	1.177197e-4
5	8172369	7951207	NM_052932	TMEM123	0.501208	5.157435e-8	8.936287e-4	1.787257e-4
6	8172369	8128592	NM_004849	ATG5	0.499901	5.656545e-8	9.801096e-4	1.633516e-4
7	8172369	8097066	NM_020961	METTL14	0.499560	5.793869e-8	1.003904e-3	1.434148e-4
8	8172369	8023191	NM_005901	SMAD2	0.495925	7.473436e-8	1.294922e-3	1.618653e-4
9	8172369	8154656	NM_022160	DMRTA1	-0.495788	7.545369e-8	1.307386e-3	1.452651e-4
10	8172369	7968563	NM_002915	RFC3	0.491781	9.954274e-8	1.724777e-3	1.724777e-4
11	8172369	7961960	ENST00000391247		0.489670	1.150190e-7	1.992934e-3	1.811759e-4
12	8172369	7900878	NM_057091	ARTN	-0.489643	1.152347e-7	1.996671e-3	1.663892e-4
13	8172369	8035773	NM_001099269	ZNF506	0.485406	1.535640e-7	2.660803e-3	2.046772e-4
14	8172369	7910372	NM_001010858	RNF187	-0.484358	1.647665e-7	2.854908e-3	2.039220e-4
15	8172369	8027304	NM_001076678	ZNF493	0.483658	1.726858e-7	2.992127e-3	1.994751e-4
16	8172369	7952984	ENST00000408512		0.482308	1.889904e-7	3.274636e-3	2.046648e-4
17	8172369	8131135	NM_018641	CHST12	-0.481479	1.997104e-7	3.460383e-3	2.035519e-4
18	8172369	8025998	NM_003437	ZNF136	0.481384	2.009674e-7	3.482161e-3	1.934534e-4
19	8172369	7919598			-0.480864	2.080370e-7	3.604656e-3	1.897188e-4
20	8172369	8094719	NM_018177	N4BP2	0.479767	2.237219e-7	3.876429e-3	1.938215e-4
21	8172369	8084045	NM_033540	MFN1	0.478899	2.369117e-7	4.104970e-3	1.954748e-4
22	8172369	8147396	NM_017864	INTS8	0.478875	2.372907e-7	4.111535e-3	1.868880e-4
23	8172369	8146717	NM_013257	SGK3	0.478103	2.496623e-7	4.325899e-3	1.880825e-4
24	8172369	8176255	NM_018196	TMLHE	0.477809	2.545413e-7	4.410437e-3	1.837682e-4
25	8172369	8097704	NM_018241	TMEM184C	0.476283	2.813129e-7	4.874309e-3	1.949724e-4
26	8172369	7967039	NM_002442	MSI1	-0.475384	2.983316e-7	5.169192e-3	1.988151e-4
27	8172369	8053882	NM_004418	DUSP2	-0.474780	3.103078e-7	5.376702e-3	1.991371e-4
28	8172369	7908178	NM_017673	C1orf26	0.473809	3.305035e-7	5.726634e-3	2.045226e-4
29	8172369	7951046	NM_005591	MRE11A	0.473510	3.369817e-7	5.838882e-3	2.013407e-4
30	8172369	7929562	NM_014803	ZNF518A	0.472022	3.710329e-7	6.428888e-3	2.142963e-4
31	8172369	8052269	NM_001135597	CCDC88A	0.471911	3.736924e-7	6.474968e-3	2.088699e-4
32	8172369	8034605	NM_052850	GADD45GIP1	-0.471893	3.741248e-7	6.482461e-3	2.025769e-4
33	8172369	8027279	NM_025189	ZNF430	0.471185	3.915876e-7	6.785038e-3	2.056072e-4
34	8172369	7926356	NM_001001484	PTER	0.470193	4.173420e-7	7.231284e-3	2.126848e-4
35	8172369	7924823	NM_023007	JMJD4	-0.470079	4.204000e-7	7.284270e-3	2.081220e-4
36	8172369	8014073	NM_018405	C17orf79	-0.469284	4.423790e-7	7.665100e-3	2.129194e-4
37	8172369	8031550	NM_001130071	EPN1	-0.467646	4.910926e-7	8.509162e-3	2.299774e-4
38	8172369	8170027	NM_182540	DDX26B	0.466907	5.147228e-7	8.918602e-3	2.347001e-4
39	8172369	8133074	NR_027393	INTS4L1	0.466807	5.179979e-7	8.975350e-3	2.301372e-4
40	8172369	8110872	NM_033267	IRX2	-0.466505	5.280188e-7	9.148981e-3	2.287245e-4
41	8172369	8160016	NM_012416	RANBP6	0.466354	5.330807e-7	9.236688e-3	2.252851e-4
42	8172369	8039269	NM_198988	LENG9	-0.466087	5.421714e-7	9.394203e-3	2.236715e-4
43	8172369	8043349	NM_022662	ANAPC1	0.465942	5.471581e-7	9.480609e-3	2.204793e-4
44	8172369	7927799	ENST00000298249		0.465653	5.572787e-7	9.655968e-3	2.194538e-4
45	8172369	8162352	NR_024020	NOL8	0.463332	6.449962e-7	1.117585e-2	2.483522e-4
46	8172369	8066117	NM_015474	SAMHD1	0.462903	6.625914e-7	1.148072e-2	2.495809e-4
47	8172369	8138553	NM_032581	FAM126A	0.462501	6.794672e-7	1.177313e-2	2.504921e-4
48	8172369	8160405	NM_018847	KLHL9	0.460380	7.756304e-7	1.343935e-2	2.799864e-4
49	8172369	7973756	NM_017769	G2E3	0.460323	7.783481e-7	1.348644e-2	2.752334e-4
50	8172369	7969166	NM_173605	KCNRG	0.459858	8.011744e-7	1.388195e-2	2.776390e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation