[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6479	7960068	NM_024078	NOC4L		nucleolar complex associated 4 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 6479.
Getting list of p-values for id 6479.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7960068	7920552	NM_002249	KCNN3	0.758298	7.460680e-21	1.292712e-16	1.292712e-16
2	7960068	8029950	NM_014601	EHD2	0.745509	7.410789e-20	1.284067e-15	6.420337e-16
3	7960068	7910265	NM_001098623	OBSCN	0.742711	1.202597e-19	2.083740e-15	6.945799e-16
4	7960068	8028407	NM_000540	RYR1	0.740134	1.868021e-19	3.236720e-15	8.091799e-16
5	7960068	7937560	NM_002457	MUC2	0.738366	2.519808e-19	4.366072e-15	8.732144e-16
6	7960068	8073449	NM_014460	CSDC2	0.737883	2.733145e-19	4.735720e-15	7.892867e-16
7	7960068	8003948	NM_001014985	GLTPD2	0.735224	4.262579e-19	7.385771e-15	1.055110e-15
8	7960068	8110688	NM_004174	SLC9A3	0.734028	5.197029e-19	9.004893e-15	1.125612e-15
9	7960068	8124038	ENST00000384464		0.733825	5.374247e-19	9.311957e-15	1.034662e-15
10	7960068	8141648	NM_015831	ACHE	0.732898	6.260310e-19	1.084724e-14	1.084724e-15
11	7960068	8110821	NM_001044	SLC6A3	0.732119	7.114404e-19	1.232713e-14	1.120648e-15
12	7960068	8038598	NM_016148	SHANK1	0.726632	1.728997e-18	2.995833e-14	2.496527e-15
13	7960068	8043283	NM_018433	KDM3A	-0.726020	1.906695e-18	3.303731e-14	2.541331e-15
14	7960068	8046276	NM_001003845	SP5	0.724422	2.457913e-18	4.258826e-14	3.042018e-15
15	7960068	8075118	NM_001887	CRYBB1	0.721271	4.034157e-18	6.989983e-14	4.659989e-15
16	7960068	8006865	NM_032192	PPP1R1B	0.721202	4.077759e-18	7.065533e-14	4.415958e-15
17	7960068	8007259	ENST00000225928		0.720404	4.618156e-18	8.001880e-14	4.706988e-15
18	7960068	7996027	NM_002996	CX3CL1	0.720132	4.817559e-18	8.347384e-14	4.637435e-15
19	7960068	7970241	NM_000504	F10	0.718167	6.529557e-18	1.131376e-13	5.954613e-15
20	7960068	7896985	NM_080875	MIB2	0.718044	6.654864e-18	1.153088e-13	5.765442e-15
21	7960068	7897991	NM_001012277	PRAMEF7	0.718037	6.661184e-18	1.154183e-13	5.496111e-15
22	7960068	7912606	NM_001012277	PRAMEF7	0.718037	6.661184e-18	1.154183e-13	5.246288e-15
23	7960068	7912591	NM_001012277	PRAMEF7	0.718037	6.661184e-18	1.154183e-13	5.018188e-15
24	7960068	7898594	NM_000871	HTR6	0.716516	8.414097e-18	1.457911e-13	6.074627e-15
25	7960068	8012344	NM_032580	HES7	0.715585	9.698576e-18	1.680472e-13	6.721889e-15
26	7960068	8134907	NM_000799	EPO	0.714593	1.127795e-17	1.954130e-13	7.515885e-15
27	7960068	7900540	NM_173642	RIMKLA	0.714266	1.185226e-17	2.053641e-13	7.606078e-15
28	7960068	8001449	NM_024336	IRX3	0.713829	1.266201e-17	2.193946e-13	7.835521e-15
29	7960068	7964976	NR_026837	LOC283392	0.713688	1.293454e-17	2.241168e-13	7.728165e-15
30	7960068	8084397	NM_014693	ECE2	0.713222	1.387804e-17	2.404648e-13	8.015493e-15
31	7960068	8138450	NM_152898	FERD3L	0.712349	1.582851e-17	2.742606e-13	8.847117e-15
32	7960068	7911750	NM_001010926	HES5	0.711854	1.705120e-17	2.954461e-13	9.232692e-15
33	7960068	8125383	NM_004557	NOTCH4	0.711098	1.909476e-17	3.308549e-13	1.002591e-14
34	7960068	8036151	NM_144617	HSPB6	0.710916	1.962011e-17	3.399576e-13	9.998753e-15
35	7960068	8131056	NM_017781	CYP2W1	0.710837	1.985274e-17	3.439885e-13	9.828241e-15
36	7960068	8075126	NM_002430	MN1	0.710676	2.033633e-17	3.523676e-13	9.787988e-15
37	7960068	8079107	NM_152393	KBTBD5	0.710609	2.054128e-17	3.559187e-13	9.619425e-15
38	7960068	7996819	NM_001793	CDH3	0.710375	2.127080e-17	3.685591e-13	9.698924e-15
39	7960068	8067409	NM_005560	LAMA5	0.710045	2.234090e-17	3.871008e-13	9.925661e-15
40	7960068	7952752	NM_007037	ADAMTS8	0.710045	2.234286e-17	3.871347e-13	9.678367e-15
41	7960068	8087145	NM_001407	CELSR3	0.709513	2.418160e-17	4.189946e-13	1.021938e-14
42	7960068	8083887	NM_005602	CLDN11	0.709360	2.473553e-17	4.285926e-13	1.020459e-14
43	7960068	7922823	NM_025191	EDEM3	-0.709324	2.486925e-17	4.309095e-13	1.002115e-14
44	7960068	8006239	NM_001042492	NF1	-0.708063	2.997368e-17	5.193540e-13	1.180350e-14
45	7960068	8061303	NM_002196	INSM1	0.707771	3.128980e-17	5.421583e-13	1.204796e-14
46	7960068	8084929	NM_152672	OSTalpha	0.707508	3.252824e-17	5.636169e-13	1.225254e-14
47	7960068	7946860	NM_000352	ABCC8	0.707410	3.299822e-17	5.717602e-13	1.216511e-14
48	7960068	8033598	NM_032370	ZNF414	0.707215	3.395964e-17	5.884186e-13	1.225872e-14
49	7960068	8037513	NM_138568	EXOC3L2	0.706623	3.704533e-17	6.418844e-13	1.309968e-14
50	7960068	8115691	NM_003062	SLIT3	0.706258	3.908456e-17	6.772182e-13	1.354436e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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