Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6068	7932285	NM_024948	FAM188A		family with sequence similarity 188, member A

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7932285	7917120	NM_015017	USP33		0.897350	2.239290e-38	3.880018e-34	3.880018e-34
2	7932285	7908421	NM_004600	TROVE2		0.895924	4.389653e-38	7.605951e-34	3.802976e-34
3	7932285	7935320	NM_020123	TM9SF3		0.892916	1.760942e-37	3.051185e-33	1.017062e-33
4	7932285	8113083	NM_032042	FAM172A		0.892290	2.338302e-37	4.051576e-33	1.012894e-33
5	7932285	8115022	NM_001025105	CSNK1A1		0.889339	8.711396e-37	1.509424e-32	3.018847e-33
6	7932285	8058127	NR_027856	CLK1		0.887689	1.787211e-36	3.096701e-32	5.161168e-33
7	7932285	8083183	NM_001080415	SR140		0.886946	2.462386e-36	4.266576e-32	6.095109e-33
8	7932285	7933947	NM_022079	HERC4		0.885008	5.614589e-36	9.728398e-32	1.216050e-32
9	7932285	7972062	NM_012158	FBXL3		0.884346	7.417303e-36	1.285196e-31	1.427996e-32
10	7932285	8100615	NM_018227	UBA6		0.883751	9.510680e-36	1.647915e-31	1.647915e-32
11	7932285	8052526	NM_003400	XPO1		0.883186	1.203001e-35	2.084441e-31	1.894946e-32
12	7932285	7951008	NM_024116	TAF1D		0.883161	1.215671e-35	2.106394e-31	1.755328e-32
13	7932285	7903519	NM_018061	PRPF38B		0.883136	1.228291e-35	2.128260e-31	1.637123e-32
14	7932285	8045697	NM_018151	RIF1		0.882052	1.920409e-35	3.327493e-31	2.376781e-32
15	7932285	8127698	NM_017934	PHIP		0.881681	2.235374e-35	3.873233e-31	2.582155e-32
16	7932285	8054771	NM_025181	SLC35F5		0.881517	2.390214e-35	4.141524e-31	2.588453e-32
17	7932285	8085852	NM_018297	NGLY1		0.881479	2.427601e-35	4.206304e-31	2.474297e-32
18	7932285	8095163	NM_001024924	EXOC1		0.881029	2.917063e-35	5.054395e-31	2.807997e-32
19	7932285	8070341	NM_033656	BRWD1		0.880679	3.361673e-35	5.824771e-31	3.065669e-32
20	7932285	7934812	NM_015045	WAPAL		0.880620	3.443155e-35	5.965955e-31	2.982978e-32
21	7932285	8120992	NM_015021	ZNF292		0.880590	3.485420e-35	6.039188e-31	2.875804e-32
22	7932285	7903188	NM_021190	PTBP2		0.880220	4.047837e-35	7.013686e-31	3.188039e-32
23	7932285	8047339	NR_026584	BZW1L1		0.880192	4.093322e-35	7.092498e-31	3.083695e-32
24	7932285	8044766	NM_016133	INSIG2		0.879725	4.941082e-35	8.561413e-31	3.567256e-32
25	7932285	8173673	NM_000489	ATRX		0.878667	7.542806e-35	1.306942e-30	5.227768e-32
26	7932285	8116664	NM_003913	PRPF4B		0.878290	8.763786e-35	1.518501e-30	5.840389e-32
27	7932285	8084146	NM_001013439	FXR1		0.877190	1.353303e-34	2.344867e-30	8.684694e-32
28	7932285	8079346	NM_014016	SACM1L		0.877115	1.393825e-34	2.415081e-30	8.625290e-32
29	7932285	8084173	NM_014616	ATP11B		0.877072	1.417482e-34	2.456072e-30	8.469213e-32
30	7932285	8084016	NM_006218	PIK3CA		0.877007	1.453909e-34	2.519188e-30	8.397295e-32
31	7932285	8100026	NM_006095	ATP8A1		0.876183	2.006331e-34	3.476370e-30	1.121410e-31
32	7932285	8039947	NM_006625	SRSF10		0.875913	2.228684e-34	3.861641e-30	1.206763e-31
33	7932285	8140942	NM_001040057	FAM133B		0.875892	2.247083e-34	3.893521e-30	1.179855e-31
34	7932285	8042601	NM_014497	ZNF638		0.875696	2.425001e-34	4.201799e-30	1.235823e-31
35	7932285	8053046	NM_003584	DUSP11		0.873667	5.291458e-34	9.168509e-30	2.619574e-31
36	7932285	7970907	NM_014887	N4BP2L2		0.873198	6.325319e-34	1.095988e-29	3.044411e-31
37	7932285	8021015	NM_002647	PIK3C3		0.872096	9.595465e-34	1.662606e-29	4.493530e-31
38	7932285	7976598	NM_032632	PAPOLA		0.871677	1.122924e-33	1.945691e-29	5.120240e-31
39	7932285	7977058	NM_001969	EIF5		0.871567	1.170233e-33	2.027664e-29	5.199137e-31
40	7932285	7903032	NM_007358	MTF2		0.871467	1.214748e-33	2.104794e-29	5.261985e-31
41	7932285	8023195	NM_005901	SMAD2		0.871294	1.296052e-33	2.245669e-29	5.477242e-31
42	7932285	7987981	NM_174916	UBR1		0.870207	1.942369e-33	3.365543e-29	8.013198e-31
43	7932285	7942839	NM_015885	PCF11		0.869795	2.261504e-33	3.918508e-29	9.112809e-31
44	7932285	8084694	NM_001967	EIF4A2		0.869694	2.347657e-33	4.067785e-29	9.244967e-31
45	7932285	8082911	NM_006153	NCK1		0.869400	2.615865e-33	4.532509e-29	1.007224e-30
46	7932285	7974566	NM_018229	MUDENG		0.869336	2.678486e-33	4.641013e-29	1.008916e-30
47	7932285	7913712	NM_006625	SRSF10		0.869111	2.909754e-33	5.041731e-29	1.072709e-30
48	7932285	7968516	NM_015032	PDS5B		0.868838	3.215101e-33	5.570806e-29	1.160585e-30
49	7932285	8138401	NM_015132	SNX13		0.868398	3.776671e-33	6.543837e-29	1.335477e-30
50	7932285	8132503	NM_004760	STK17A		0.868109	4.196386e-33	7.271079e-29	1.454216e-30

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.