[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1064	8124423	NM_003518	HIST1H2BG		histone cluster 1, H2bg

Fetching correlation data, please wait...
Getting list of correlations for id 1064.
Getting list of p-values for id 1064.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.103 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8124423	8053165	NM_053050	MRPL53	0.453607	1.176462e-6	2.038455e-2	2.038455e-2
2	8124423	8124531	NM_003533	HIST1H3I	0.438114	2.952176e-6	5.115235e-2	2.557617e-2
3	8124423	8117598	NM_021968	HIST1H4J	0.427194	5.498066e-6	9.526499e-2	3.175500e-2
4	8124423	7942267	NM_001012710	KRTAP5-10	-0.422056	7.312327e-6	1.267007e-1	3.167517e-2
5	8124423	8013915			-0.421286	7.628703e-6	1.321825e-1	2.643651e-2
6	8124423	8131811			-0.420247	8.075894e-6	1.399310e-1	2.332183e-2
7	8124423	8113035	ENST00000384400		-0.416781	9.752668e-6	1.689845e-1	2.414064e-2
8	8124423	7945579	NM_001142674	CHID1	0.416490	9.907140e-6	1.716610e-1	2.145763e-2
9	8124423	7905088	NM_003517	HIST2H2AC	0.416488	9.908308e-6	1.716813e-1	1.907569e-2
10	8124423	8149345	ENST00000419056		-0.413756	1.147896e-5	1.988960e-1	1.988960e-2
11	8124423	8082163	ENST00000384275		-0.406689	1.669520e-5	2.892777e-1	2.629797e-2
12	8124423	8020321	AF090940		-0.403223	2.000120e-5	3.465608e-1	2.888007e-2
13	8124423	8133027	AK128836	LOC100132217	-0.402749	2.049908e-5	3.551876e-1	2.732213e-2
14	8124423	8117589	NM_003536	HIST1H3H	0.402310	2.096950e-5	3.633385e-1	2.595275e-2
15	8124423	8171890	ENST00000364486		-0.401996	2.131296e-5	3.692897e-1	2.461931e-2
16	8124423	8117583	NM_003509	HIST1H2AI	0.397566	2.674705e-5	4.634461e-1	2.896538e-2
17	8124423	8124521	NM_003541	HIST1H4K	0.397430	2.693277e-5	4.666642e-1	2.745083e-2
18	8124423	8149590	ENST00000325394		-0.396155	2.873394e-5	4.978731e-1	2.765961e-2
19	8124423	8156569	hsa-mir-23b		-0.394777	3.080739e-5	5.337997e-1	2.809472e-2
20	8124423	8019578	NM_030967	KRTAP1-1	-0.393961	3.210078e-5	5.562102e-1	2.781051e-2
21	8124423	8015196	NM_030967	KRTAP1-1	-0.393961	3.210078e-5	5.562102e-1	2.648620e-2
22	8124423	7963590	NM_015989	CSAD	-0.392978	3.372557e-5	5.843630e-1	2.656195e-2
23	8124423	8073032	NM_020243	TOMM22	0.392197	3.507172e-5	6.076877e-1	2.642121e-2
24	8124423	7919619	NM_003516	HIST2H2AA3	0.391696	3.596010e-5	6.230807e-1	2.596170e-2
25	8124423	7905079	NM_003516	HIST2H2AA3	0.391696	3.596010e-5	6.230807e-1	2.492323e-2
26	8124423	7987097	hsa-mir-211		-0.390328	3.849812e-5	6.670569e-1	2.565604e-2
27	8124423	7919642	NM_175065	HIST2H2AB	0.389887	3.935065e-5	6.818286e-1	2.525291e-2
28	8124423	8117426	NM_003524	HIST1H2BH	0.389784	3.955249e-5	6.853259e-1	2.447593e-2
29	8124423	8034448	NM_016145	C19orf56	0.387237	4.486161e-5	7.773171e-1	2.680404e-2
30	8124423	8100521	ENST00000410884		0.386442	4.664929e-5	8.082922e-1	2.694307e-2
31	8124423	7986642	NR_027407	GOLGA8DP	-0.382961	5.529534e-5	9.581024e-1	3.090653e-2
32	8124423	8093343	NM_001127178	PIGG	-0.382808	5.570591e-5	9.652163e-1	3.016301e-2
33	8124423	8007290	NM_170607	MLX	0.382197	5.738232e-5	9.942634e-1	3.012919e-2
34	8124423	7968270	NR_002162	ATP5EP2	0.381744	5.865548e-5	1.016323e+0	2.989187e-2
35	8124423	8011407	NM_014604	TAX1BP3	0.381607	5.904456e-5	1.023065e+0	2.923043e-2
36	8124423	7959751	NM_152437	ZNF664	0.380044	6.366709e-5	1.103160e+0	3.064333e-2
37	8124423	7991695	NR_027407	GOLGA8DP	-0.379424	6.559278e-5	1.136526e+0	3.071692e-2
38	8124423	8041172	NM_199280	FAM179A	-0.374126	8.440726e-5	1.462525e+0	3.848749e-2
39	8124423	7913380	NM_032264	NBPF3	-0.373634	8.638837e-5	1.496851e+0	3.838080e-2
40	8124423	7991835	BC146939	TMEM8A	0.373424	8.724542e-5	1.511701e+0	3.779254e-2
41	8124423	7975410	ENST00000410215		-0.372459	9.129732e-5	1.581909e+0	3.858314e-2
42	8124423	8078898	NM_017875	SLC25A38	0.372231	9.227789e-5	1.598899e+0	3.806902e-2
43	8124423	7941164	NM_004927	MRPL49	0.371891	9.376136e-5	1.624603e+0	3.778147e-2
44	8124423	7925128	ENST00000422958		0.371816	9.408890e-5	1.630278e+0	3.705178e-2
45	8124423	8097743	ENST00000410285		-0.371251	9.661120e-5	1.673982e+0	3.719961e-2
46	8124423	8153776	NM_183057	VPS28	0.369879	1.029944e-4	1.784584e+0	3.879529e-2
47	8124423	7913242	NM_024544	MUL1	0.369220	1.061997e-4	1.840123e+0	3.915154e-2
48	8124423	8077526			0.368158	1.115591e-4	1.932985e+0	4.027052e-2
49	8124423	7945645	NM_001005922	KRTAP5-1	-0.367423	1.154152e-4	1.999800e+0	4.081224e-2
50	8124423	8132998			0.366355	1.212393e-4	2.100713e+0	4.201426e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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