[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2698	8044035	NM_003855	IL18R1		interleukin 18 receptor 1

Fetching correlation data, please wait...
Getting list of correlations for id 2698.
Getting list of p-values for id 2698.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8044035	8148358	NM_016018	PHF20L1	0.781344	8.132690e-23	1.409151e-18	1.409151e-18
2	8044035	7918902	NR_026665	CD58	0.774915	3.027040e-22	5.244952e-18	2.622476e-18
3	8044035	8102817	NM_201999	ELF2	0.768750	1.025317e-21	1.776566e-17	5.921888e-18
4	8044035	8044049	NM_003853	IL18RAP	0.763252	2.950245e-21	5.111889e-17	1.277972e-17
5	8044035	7989037	NM_004748	CCPG1	0.759224	6.284094e-21	1.088845e-16	2.177690e-17
6	8044035	7978932	NM_006939	SOS2	0.757976	7.919424e-21	1.372199e-16	2.286998e-17
7	8044035	7974851	NM_001530	HIF1A	0.756788	9.857140e-21	1.707947e-16	2.439924e-17
8	8044035	8055702	NM_004688	NMI	0.755828	1.175410e-20	2.036633e-16	2.545791e-17
9	8044035	8093961	NM_014743	KIAA0232	0.755368	1.278360e-20	2.215014e-16	2.461127e-17
10	8044035	8120943	NM_016230	CYB5R4	0.754904	1.391128e-20	2.410407e-16	2.410407e-17
11	8044035	8107330	NM_001127511	APC	0.750883	2.872286e-20	4.976810e-16	4.524373e-17
12	8044035	8115606	NM_006425	SLU7	0.749686	3.554968e-20	6.159694e-16	5.133078e-17
13	8044035	7922707	NM_021133	RNASEL	0.747366	5.355761e-20	9.279926e-16	7.138405e-17
14	8044035	7989023	NM_004580	RAB27A	0.746648	6.074575e-20	1.052542e-15	7.518154e-17
15	8044035	8083569	NM_015508	TIPARP	0.746263	6.497161e-20	1.125763e-15	7.505088e-17
16	8044035	8056977	NM_006164	NFE2L2	0.745882	6.944172e-20	1.203217e-15	7.520104e-17
17	8044035	7925201	NM_016374	ARID4B	0.745848	6.986531e-20	1.210556e-15	7.120919e-17
18	8044035	7974621	NM_002892	ARID4A	0.745787	7.060641e-20	1.223397e-15	6.796651e-17
19	8044035	8107356	NM_152624	DCP2	0.744150	9.383173e-20	1.625822e-15	8.556960e-17
20	8044035	8162086	NM_015239	AGTPBP1	0.744007	9.618426e-20	1.666585e-15	8.332923e-17
21	8044035	8138922	NM_015483	KBTBD2	0.743573	1.036778e-19	1.796426e-15	8.554408e-17
22	8044035	7979044	NM_020921	NIN	0.743271	1.092189e-19	1.892435e-15	8.601978e-17
23	8044035	8022441	NM_005406	ROCK1	0.742072	1.342211e-19	2.325650e-15	1.011152e-16
24	8044035	8133788	NM_002835	PTPN12	0.740889	1.642848e-19	2.846563e-15	1.186068e-16
25	8044035	8081055	NM_014043	CHMP2B	0.738880	2.310343e-19	4.003131e-15	1.601252e-16
26	8044035	8045514	NM_001001664	SPOPL	0.737982	2.688085e-19	4.657644e-15	1.791402e-16
27	8044035	7918157	NM_006113	VAV3	0.737971	2.692667e-19	4.665585e-15	1.727994e-16
28	8044035	8113305	NM_001270	CHD1	0.737826	2.759449e-19	4.781296e-15	1.707606e-16
29	8044035	7986293	NM_018349	MCTP2	0.737180	3.075493e-19	5.328907e-15	1.837554e-16
30	8044035	8160718	NR_023917	PTENP1	0.737099	3.117590e-19	5.401848e-15	1.800616e-16
31	8044035	8106602	NM_014733	ZFYVE16	0.737004	3.167615e-19	5.488527e-15	1.770493e-16
32	8044035	8089527	NM_022488	ATG3	0.736893	3.226833e-19	5.591134e-15	1.747229e-16
33	8044035	8013908	NM_020772	NUFIP2	0.735323	4.192910e-19	7.265055e-15	2.201532e-16
34	8044035	7906400	NM_005531	IFI16	0.734185	5.063719e-19	8.773906e-15	2.580560e-16
35	8044035	8146637	NM_152758	YTHDF3	0.734147	5.095251e-19	8.828542e-15	2.522441e-16
36	8044035	8146544	NM_001077619	UBXN2B	0.733894	5.313204e-19	9.206189e-15	2.557275e-16
37	8044035	8113358	NM_005668	ST8SIA4	0.733634	5.546188e-19	9.609880e-15	2.597265e-16
38	8044035	8050128	NM_020738	KIDINS220	0.733184	5.972770e-19	1.034902e-14	2.723426e-16
39	8044035	7950838	NM_007166	PICALM	0.733147	6.008846e-19	1.041153e-14	2.669622e-16
40	8044035	7970655	NM_004685	MTMR6	0.732594	6.581637e-19	1.140400e-14	2.851001e-16
41	8044035	8055890	NM_005843	STAM2	0.731849	7.435667e-19	1.288378e-14	3.142385e-16
42	8044035	7932911	NM_004521	KIF5B	0.730729	8.927496e-19	1.546867e-14	3.683017e-16
43	8044035	7965123	NM_001143885	PPP1R12A	0.730130	9.840361e-19	1.705039e-14	3.965208e-16
44	8044035	8046726	NM_001130445	SSFA2	0.729943	1.014352e-18	1.757568e-14	3.994472e-16
45	8044035	7929288	NM_019053	EXOC6	0.729826	1.033895e-18	1.791429e-14	3.980954e-16
46	8044035	8076515	NM_014570	ARFGAP3	0.729606	1.071428e-18	1.856463e-14	4.035789e-16
47	8044035	7926836	NM_021252	RAB18	0.729406	1.106710e-18	1.917597e-14	4.079994e-16
48	8044035	7922889	NM_006469	IVNS1ABP	0.729246	1.135755e-18	1.967922e-14	4.099837e-16
49	8044035	8046003	NM_012198	GCA	0.729213	1.141782e-18	1.978366e-14	4.037482e-16
50	8044035	8131975	NM_006024	TAX1BP1	0.729139	1.155408e-18	2.001975e-14	4.003950e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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