[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4352	8169898	NM_004794	RAB33A		RAB33A, member RAS oncogene family

Fetching correlation data, please wait...
Getting list of correlations for id 4352.
Getting list of p-values for id 4352.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8169898	7983663	NM_005154	USP8	-0.704961	4.723719e-17	8.184787e-13	8.184787e-13
2	8169898	8109403	NR_024152	MFAP3	-0.688724	4.658357e-16	8.071536e-12	4.035768e-12
3	8169898	8112121	NM_173514	SLC38A9	-0.686632	6.188150e-16	1.072221e-11	3.574069e-12
4	8169898	7899265	NM_006142	SFN	0.682647	1.056171e-15	1.830028e-11	4.575069e-12
5	8169898	7910265	NM_001098623	OBSCN	0.676155	2.478627e-15	4.294716e-11	8.589432e-12
6	8169898	7908437	NM_024529	CDC73	-0.669396	5.888172e-15	1.020244e-10	1.700406e-11
7	8169898	7960099	NM_170683	P2RX2	0.668589	6.519359e-15	1.129609e-10	1.613728e-11
8	8169898	7932186	NM_001033858	DCLRE1C	-0.667420	7.551557e-15	1.308458e-10	1.635573e-11
9	8169898	8153322	NM_015193	ARC	0.666201	8.796070e-15	1.524095e-10	1.693439e-11
10	8169898	8084219	NM_017644	KLHL24	-0.666133	8.870311e-15	1.536959e-10	1.536959e-11
11	8169898	8021113	NM_145055	C18orf25	-0.664532	1.082605e-14	1.875829e-10	1.705299e-11
12	8169898	8037513	NM_138568	EXOC3L2	0.663632	1.210144e-14	2.096816e-10	1.747346e-11
13	8169898	8177011	NM_004192	ASMTL	0.662952	1.316162e-14	2.280514e-10	1.754242e-11
14	8169898	8032051	NM_182577	ODF3L2	0.662215	1.441179e-14	2.497131e-10	1.783665e-11
15	8169898	8042119	NM_022894	PAPOLG	-0.660557	1.765816e-14	3.059629e-10	2.039753e-11
16	8169898	7921936	NM_177398	LMX1A	0.659895	1.914324e-14	3.316949e-10	2.073093e-11
17	8169898	7922823	NM_025191	EDEM3	-0.659610	1.981897e-14	3.434033e-10	2.020019e-11
18	8169898	8092201	NM_024665	TBL1XR1	-0.659207	2.081447e-14	3.606523e-10	2.003624e-11
19	8169898	8074082	NM_152299	NCAPH2	0.659007	2.132625e-14	3.695199e-10	1.944842e-11
20	8169898	8052024	NM_025133	FBXO11	-0.658449	2.282125e-14	3.954239e-10	1.977119e-11
21	8169898	7984011	NM_012182	FOXB1	0.657082	2.691925e-14	4.664299e-10	2.221095e-11
22	8169898	8162833	NM_015051	ERP44	-0.656247	2.976539e-14	5.157449e-10	2.344295e-11
23	8169898	8172317	NM_006950	SYN1	0.655928	3.093079e-14	5.359378e-10	2.330164e-11
24	8169898	7911383	NM_017891	C1orf159	0.655367	3.308107e-14	5.731957e-10	2.388316e-11
25	8169898	7943552	NM_015423	AASDHPPT	-0.653859	3.961001e-14	6.863226e-10	2.745291e-11
26	8169898	7914667	NM_052896	CSMD2	0.651790	5.063080e-14	8.772798e-10	3.374153e-11
27	8169898	7913450	NM_005529	HSPG2	0.651117	5.481580e-14	9.497934e-10	3.517753e-11
28	8169898	8136080	NM_005631	SMO	0.651097	5.494869e-14	9.520960e-10	3.400343e-11
29	8169898	7910706	NM_006499	LGALS8	-0.649465	6.656266e-14	1.153331e-9	3.977004e-11
30	8169898	8049919	NM_152783	D2HGDH	0.648942	7.077082e-14	1.226246e-9	4.087487e-11
31	8169898	8107406	ENST00000410774		0.648928	7.088223e-14	1.228176e-9	3.961859e-11
32	8169898	8080128	NM_000839	GRM2	0.648896	7.114976e-14	1.232812e-9	3.852537e-11
33	8169898	7970241	NM_000504	F10	0.648719	7.263306e-14	1.258513e-9	3.813676e-11
34	8169898	8066498	NM_003833	MATN4	0.648206	7.711957e-14	1.336251e-9	3.930149e-11
35	8169898	8024100	NM_138690	GRIN3B	0.648043	7.860067e-14	1.361914e-9	3.891182e-11
36	8169898	8090772	NM_007027	TOPBP1	-0.647861	8.028731e-14	1.391138e-9	3.864273e-11
37	8169898	8060609	ENST00000410721		0.647713	8.167920e-14	1.415255e-9	3.825015e-11
38	8169898	8165538	NM_001033113	ENTPD8	0.646791	9.091249e-14	1.575241e-9	4.145370e-11
39	8169898	8170648	NM_001711	BGN	0.646494	9.409862e-14	1.630447e-9	4.180633e-11
40	8169898	7987701	NM_016642	SPTBN5	0.645924	1.005267e-13	1.741826e-9	4.354566e-11
41	8169898	7905862	NM_152494	DCST1	0.645701	1.031437e-13	1.787171e-9	4.358954e-11
42	8169898	8120022	NM_001253	CDC5L	-0.645103	1.105203e-13	1.914986e-9	4.559490e-11
43	8169898	8171917	NM_031894	FTHL17	0.644893	1.132192e-13	1.961749e-9	4.562206e-11
44	8169898	8049166	NM_005199	CHRNG	0.644491	1.185871e-13	2.054759e-9	4.669907e-11
45	8169898	7960744	NM_001733	C1R	0.644467	1.189170e-13	2.060475e-9	4.578833e-11
46	8169898	8029728	NM_000164	GIPR	0.643297	1.360091e-13	2.356630e-9	5.123110e-11
47	8169898	8096556	NM_015143	METAP1	-0.643144	1.384090e-13	2.398213e-9	5.102580e-11
48	8169898	8046555	NM_014621	HOXD4	0.643061	1.397256e-13	2.421025e-9	5.043802e-11
49	8169898	8115524	NM_014666	CLINT1	-0.642857	1.430279e-13	2.478245e-9	5.057642e-11
50	8169898	8171119	NM_004192	ASMTL	0.642763	1.445789e-13	2.505119e-9	5.010238e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation