[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4305	8124813	NM_014641	MDC1		mediator of DNA-damage checkpoint 1
4306	8178404	NM_014641	MDC1		mediator of DNA-damage checkpoint 1

Fetching correlation data, please wait...
Getting list of correlations for id 4305.
Getting list of p-values for id 4305.
1 of 2 done.
Getting list of correlations for id 4306.
Getting list of p-values for id 4306.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178404	8124813	NM_014641	MDC1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8124813	8178404	NM_014641	MDC1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8124813	7976726	NM_016337	EVL	0.603711	9.296310e-12	3.221543e-7	1.073848e-7
4	8178404	7976726	NM_016337	EVL	0.603711	9.296310e-12	3.221543e-7	8.053858e-8
5	8178404	8036525	NM_001042600	MAP4K1	0.593537	2.511516e-11	8.703406e-7	1.740681e-7
6	8124813	8036525	NM_001042600	MAP4K1	0.593537	2.511516e-11	8.703406e-7	1.450568e-7
7	8178404	8118734	NM_002224	ITPR3	0.564786	3.481571e-10	1.206504e-5	1.723577e-6
8	8124813	8118734	NM_002224	ITPR3	0.564786	3.481571e-10	1.206504e-5	1.508130e-6
9	8178404	8085431	NM_024923	NUP210	0.555659	7.617701e-10	2.639838e-5	2.933153e-6
10	8124813	8085431	NM_024923	NUP210	0.555659	7.617701e-10	2.639838e-5	2.639838e-6
11	8124813	8109438	NM_033551	LARP1	0.548746	1.357128e-9	4.702991e-5	4.275446e-6
12	8178404	8109438	NM_033551	LARP1	0.548746	1.357128e-9	4.702991e-5	3.919159e-6
13	8124813	8006788	NM_005937	MLLT6	0.546488	1.634325e-9	5.663590e-5	4.356608e-6
14	8178404	8006788	NM_005937	MLLT6	0.546488	1.634325e-9	5.663590e-5	4.045422e-6
15	8178404	8043725	NM_001079	ZAP70	0.545140	1.824792e-9	6.323634e-5	4.215756e-6
16	8124813	8043725	NM_001079	ZAP70	0.545140	1.824792e-9	6.323634e-5	3.952271e-6
17	8124813	8025788	NM_001128849	SMARCA4	0.543321	2.115900e-9	7.332441e-5	4.313201e-6
18	8178404	8025788	NM_001128849	SMARCA4	0.543321	2.115900e-9	7.332441e-5	4.073578e-6
19	8178404	8071823	NM_012295	CABIN1	0.539469	2.886429e-9	1.000263e-4	5.264543e-6
20	8124813	8071823	NM_012295	CABIN1	0.539469	2.886429e-9	1.000263e-4	5.001316e-6
21	8178404	8060675	NM_021873	CDC25B	0.537836	3.288893e-9	1.139733e-4	5.427300e-6
22	8124813	8060675	NM_021873	CDC25B	0.537836	3.288893e-9	1.139733e-4	5.180604e-6
23	8178404	8065612	NM_080616	C20orf112	0.537387	3.408558e-9	1.181202e-4	5.135659e-6
24	8124813	8065612	NM_080616	C20orf112	0.537387	3.408558e-9	1.181202e-4	4.921673e-6
25	8124813	8137874	NM_032415	CARD11	0.530130	6.031680e-9	2.090218e-4	8.360874e-6
26	8178404	8137874	NM_032415	CARD11	0.530130	6.031680e-9	2.090218e-4	8.039302e-6
27	8178404	8122971	NM_020732	ARID1B	0.529779	6.198170e-9	2.147914e-4	7.955237e-6
28	8124813	8122971	NM_020732	ARID1B	0.529779	6.198170e-9	2.147914e-4	7.671121e-6
29	8124813	7956930	NM_006482	DYRK2	0.525942	8.333608e-9	2.887928e-4	9.958374e-6
30	8178404	7956930	NM_006482	DYRK2	0.525942	8.333608e-9	2.887928e-4	9.626428e-6
31	8178404	8011222	NM_017575	SMG6	0.523798	9.816889e-9	3.401945e-4	1.097402e-5
32	8124813	8011222	NM_017575	SMG6	0.523798	9.816889e-9	3.401945e-4	1.063108e-5
33	8178404	7979611	NM_006977	ZBTB25	0.523776	9.833556e-9	3.407720e-4	1.032643e-5
34	8124813	7979611	NM_006977	ZBTB25	0.523776	9.833556e-9	3.407720e-4	1.002271e-5
35	8124813	7923917	NM_005449	FAIM3	0.523231	1.024990e-8	3.552001e-4	1.014858e-5
36	8178404	7923917	NM_005449	FAIM3	0.523231	1.024990e-8	3.552001e-4	9.866671e-6
37	8178404	8010188	NM_001142640	TNRC6C	0.520926	1.220415e-8	4.229225e-4	1.143034e-5
38	8124813	8010188	NM_001142640	TNRC6C	0.520926	1.220415e-8	4.229225e-4	1.112954e-5
39	8178404	8077804	NM_014760	TATDN2	0.520569	1.253677e-8	4.344493e-4	1.113973e-5
40	8124813	8077804	NM_014760	TATDN2	0.520569	1.253677e-8	4.344493e-4	1.086123e-5
41	8178404	8010161	NM_006640	SEPT9	0.515515	1.829084e-8	6.338507e-4	1.545977e-5
42	8124813	8010161	NM_006640	SEPT9	0.515515	1.829084e-8	6.338507e-4	1.509168e-5
43	8178404	8067040	NM_012340	NFATC2	0.513559	2.113664e-8	7.324691e-4	1.703416e-5
44	8124813	8067040	NM_012340	NFATC2	0.513559	2.113664e-8	7.324691e-4	1.664702e-5
45	8124813	8080100	NM_015106	RAD54L2	0.511519	2.455036e-8	8.507682e-4	1.890596e-5
46	8178404	8080100	NM_015106	RAD54L2	0.511519	2.455036e-8	8.507682e-4	1.849496e-5
47	8178404	7951896	NM_004716	PCSK7	0.511074	2.536297e-8	8.789283e-4	1.870060e-5
48	8124813	7951896	NM_004716	PCSK7	0.511074	2.536297e-8	8.789283e-4	1.831101e-5
49	8178404	7994386	NM_007245	ATXN2L	0.506937	3.424771e-8	1.186820e-3	2.422082e-5
50	8124813	7994386	NM_007245	ATXN2L	0.506937	3.424771e-8	1.186820e-3	2.373640e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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