[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4011	7902043	NM_014787	DNAJC6		DnaJ (Hsp40) homolog, subfamily C, member 6

Fetching correlation data, please wait...
Getting list of correlations for id 4011.
Getting list of p-values for id 4011.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7902043	8166723	NM_021083	XK	0.813113	5.989961e-26	1.037881e-21	1.037881e-21
2	7902043	8063478	NM_080821	C20orf108	0.796743	2.891641e-24	5.010347e-20	2.505174e-20
3	7902043	8151592	NM_001738	CA1	0.794788	4.486571e-24	7.773881e-20	2.591294e-20
4	7902043	8096663	NM_001008388	CISD2	0.767838	1.224239e-21	2.121238e-17	5.303096e-18
5	7902043	7995237	NM_016633	AHSP	0.764700	2.239731e-21	3.880782e-17	7.761564e-18
6	7902043	7979615	NM_001024858	SPTB	0.750067	3.322486e-20	5.756871e-16	9.594785e-17
7	7902043	7946757	NM_017508	SOX6	0.748981	4.028310e-20	6.979853e-16	9.971219e-17
8	7902043	8143534	NM_000420	KEL	0.747157	5.555814e-20	9.626559e-16	1.203320e-16
9	7902043	8023466	NM_001012515	FECH	0.736376	3.518499e-19	6.096503e-15	6.773892e-16
10	7902043	8072382	NM_030758	OSBP2	0.732565	6.613020e-19	1.145838e-14	1.145838e-15
11	7902043	7998604	NM_005326	HAGH	0.729059	1.170457e-18	2.028050e-14	1.843682e-15
12	7902043	7935588	NM_000195	HPS1	0.727651	1.468507e-18	2.544483e-14	2.120402e-15
13	7902043	8150439	NM_020476	ANK1	0.725093	2.209598e-18	3.828570e-14	2.945054e-15
14	7902043	8166819	ENST00000444706		0.719392	5.403810e-18	9.363181e-14	6.687987e-15
15	7902043	8117034	NM_006877	GMPR	0.716765	8.099104e-18	1.403332e-13	9.355545e-15
16	7902043	7930398	NM_005962	MXI1	0.712764	1.487108e-17	2.576712e-13	1.610445e-14
17	7902043	8021376	NM_001144967	NEDD4L	0.712446	1.559921e-17	2.702875e-13	1.589926e-14
18	7902043	8022941	NM_015476	C18orf10	0.712434	1.562658e-17	2.707617e-13	1.504232e-14
19	7902043	8048523	NM_006736	DNAJB2	0.712312	1.591638e-17	2.757831e-13	1.451490e-14
20	7902043	8011131	NM_031430	RILP	0.712297	1.595352e-17	2.764267e-13	1.382133e-14
21	7902043	8007921	NM_001002841	MYL4	0.711522	1.792086e-17	3.105147e-13	1.478641e-14
22	7902043	8156706	NM_003275	TMOD1	0.704469	5.074487e-17	8.792563e-13	3.996620e-14
23	7902043	8003298	NM_003486	SLC7A5	0.703597	5.759208e-17	9.978980e-13	4.338687e-14
24	7902043	7988033	NM_000119	EPB42	0.703307	6.006012e-17	1.040662e-12	4.336090e-14
25	7902043	7921133	NM_004494	HDGF	0.700413	9.108202e-17	1.578178e-12	6.312713e-14
26	7902043	8164314	NM_175039	ST6GALNAC4	0.699094	1.099176e-16	1.904542e-12	7.325163e-14
27	7902043	7919984	NM_003944	SELENBP1	0.698896	1.130535e-16	1.958879e-12	7.255106e-14
28	7902043	7913644	NM_004091	E2F2	0.698078	1.269790e-16	2.200165e-12	7.857734e-14
29	7902043	8025766	NM_199141	CARM1	0.697861	1.309293e-16	2.268613e-12	7.822802e-14
30	7902043	8018097	NM_001098832	FAM104A	0.697615	1.355647e-16	2.348930e-12	7.829766e-14
31	7902043	8091485	NM_005067	SIAH2	0.695561	1.810089e-16	3.136340e-12	1.011723e-13
32	7902043	7944401	NM_000190	HMBS	0.694319	2.153595e-16	3.731534e-12	1.166104e-13
33	7902043	8079796	NM_022064	RNF123	0.693733	2.336721e-16	4.048836e-12	1.226920e-13
34	7902043	7995292	NM_005629	SLC6A8	0.693219	2.509651e-16	4.348472e-12	1.278962e-13
35	7902043	7921367	NM_003126	SPTA1	0.692993	2.589800e-16	4.487346e-12	1.282099e-13
36	7902043	8145005	NM_001978	EPB49	0.692051	2.950488e-16	5.112310e-12	1.420086e-13
37	7902043	8167360	NM_002049	GATA1	0.689683	4.086107e-16	7.079998e-12	1.913513e-13
38	7902043	8169709	NM_016417	GLRX5	0.689565	4.152907e-16	7.195743e-12	1.893617e-13
39	7902043	7976515	NM_016417	GLRX5	0.685913	6.819547e-16	1.181623e-11	3.029802e-13
40	7902043	8002087	NM_020850	RANBP10	0.685090	7.618518e-16	1.320061e-11	3.300151e-13
41	7902043	8001082	NM_005629	SLC6A8	0.685077	7.631856e-16	1.322372e-11	3.225297e-13
42	7902043	8021081	NM_001128588	SLC14A1	0.684391	8.367834e-16	1.449895e-11	3.452130e-13
43	7902043	8166784	NM_004615	TSPAN7	0.683264	9.728319e-16	1.685626e-11	3.920060e-13
44	7902043	8136341	NM_199186	BPGM	0.682922	1.018162e-15	1.764169e-11	4.009475e-13
45	7902043	8063583	NM_017495	RBM38	0.682288	1.107856e-15	1.919582e-11	4.265739e-13
46	7902043	8035494	NM_012181	FKBP8	0.681990	1.152625e-15	1.997154e-11	4.341639e-13
47	7902043	8025421	NM_016496	MARCH2	0.680809	1.347704e-15	2.335167e-11	4.968439e-13
48	7902043	7944560	NM_015313	ARHGEF12	0.680550	1.394640e-15	2.416493e-11	5.034360e-13
49	7902043	8018708	NM_022066	UBE2O	0.679166	1.673190e-15	2.899136e-11	5.916605e-13
50	7902043	7904361	NM_017709	FAM46C	0.677898	1.975392e-15	3.422761e-11	6.845522e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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