Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15707	7929624	NM_002629	PGAM1		phosphoglycerate mutase 1 (brain)
15745	7958152	NM_002629	PGAM1		phosphoglycerate mutase 1 (brain)
15884	7965480	NM_002629	PGAM1		phosphoglycerate mutase 1 (brain)

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7958152	7929624	NM_002629	PGAM1		0.997126	3.001501e-117	1.560210e-112	1.560210e-112
2	7929624	7958152	NM_002629	PGAM1		0.997126	3.001501e-117	1.560210e-112	7.801051e-113
3	7929624	7965480	NM_002629	PGAM1		0.994159	2.029587e-101	1.055000e-96	3.516666e-97
4	7965480	7929624	NM_002629	PGAM1		0.994159	2.029587e-101	1.055000e-96	2.637499e-97
5	7958152	7965480	NM_002629	PGAM1		0.992582	4.326697e-96	2.249061e-91	4.498121e-92
6	7965480	7958152	NM_002629	PGAM1		0.992582	4.326697e-96	2.249061e-91	3.748434e-92
7	7958152	8176282	NM_001029891	PGAM4		0.985874	9.345536e-82	4.857903e-77	6.939861e-78
8	7958152	8173729	NM_001029891	PGAM4		0.985874	9.345536e-82	4.857903e-77	6.072379e-78
9	7929624	8173729	NM_001029891	PGAM4		0.982532	4.828970e-77	2.510147e-72	2.789052e-73
10	7929624	8176282	NM_001029891	PGAM4		0.982532	4.828970e-77	2.510147e-72	2.510147e-73
11	7965480	8173729	NM_001029891	PGAM4		0.979280	2.936953e-73	1.526657e-68	1.387870e-69
12	7965480	8176282	NM_001029891	PGAM4		0.979280	2.936953e-73	1.526657e-68	1.272214e-69
13	7965480	8011759	NM_005022	PFN1		0.842472	1.992271e-29	1.035602e-24	7.966171e-26
14	7958152	8134552	NM_005720	ARPC1B		0.835144	1.701612e-28	8.845152e-24	6.317965e-25
15	7965480	7964466	NM_006400	DCTN2		0.830077	7.057648e-28	3.668636e-23	2.445758e-24
16	7929624	8011759	NM_005022	PFN1		0.829863	7.487775e-28	3.892220e-23	2.432638e-24
17	7929624	8134552	NM_005720	ARPC1B		0.829375	8.564423e-28	4.451873e-23	2.618749e-24
18	7958152	8116020	NM_006816	LMAN2		0.827666	1.366050e-27	7.100866e-23	3.944926e-24
19	7965480	8134552	NM_005720	ARPC1B		0.826546	1.850616e-27	9.619686e-23	5.062993e-24
20	7929624	8116020	NM_006816	LMAN2		0.825450	2.485101e-27	1.291781e-22	6.458903e-24
21	7958152	8011759	NM_005022	PFN1		0.825426	2.501112e-27	1.300103e-22	6.190966e-24
22	7965480	8116020	NM_006816	LMAN2		0.825098	2.730422e-27	1.419301e-22	6.451367e-24
23	7958152	7964466	NM_006400	DCTN2		0.823347	4.349289e-27	2.260804e-22	9.829583e-24
24	7958152	7978208	NM_012461	TINF2		0.821689	6.727341e-27	3.496939e-22	1.457058e-23
25	7929624	7964466	NM_006400	DCTN2		0.820849	8.378477e-27	4.355216e-22	1.742087e-23
26	7965480	7904974	NR_003242	C1orf152		0.820559	9.033565e-27	4.695737e-22	1.806053e-23
27	7929624	7978208	NM_012461	TINF2		0.816733	2.413630e-26	1.254629e-21	4.646775e-23
28	7958152	7904974	NR_003242	C1orf152		0.812694	6.646520e-26	3.454928e-21	1.233903e-22
29	7958152	7978201	NM_006156	NEDD8		0.809224	1.556089e-25	8.088708e-21	2.789210e-22
30	7929624	7904974	NR_003242	C1orf152		0.808483	1.861895e-25	9.678318e-21	3.226106e-22
31	7965480	8019762				0.803415	6.223085e-25	3.234822e-20	1.043491e-21
32	7965480	7978208	NM_012461	TINF2		0.801440	9.867376e-25	5.129161e-20	1.602863e-21
33	7929624	7978201	NM_006156	NEDD8		0.801388	9.987417e-25	5.191559e-20	1.573200e-21
34	7958152	8110803	NM_030782	CLPTM1L		0.798365	2.001093e-24	1.040188e-19	3.059377e-21
35	7958152	8030007	NM_001425	EMP3		0.798122	2.115112e-24	1.099456e-19	3.141304e-21
36	7965480	8019250	NM_000918	P4HB		0.795264	4.033890e-24	2.096856e-19	5.824601e-21
37	7929624	7920271	NM_019554	S100A4		0.794910	4.366737e-24	2.269873e-19	6.134793e-21
38	7929624	8019762				0.794791	4.483695e-24	2.330670e-19	6.133341e-21
39	7929624	8110803	NM_030782	CLPTM1L		0.794657	4.620365e-24	2.401712e-19	6.158236e-21
40	7958152	8019762				0.794606	4.673681e-24	2.429426e-19	6.073566e-21
41	7958152	7920271	NM_019554	S100A4		0.794213	5.101091e-24	2.651598e-19	6.467312e-21
42	7958152	7990211	NM_000520	HEXA		0.794171	5.148954e-24	2.676478e-19	6.372566e-21
43	7958152	8025076	NM_005428	VAV1		0.793573	5.881365e-24	3.057192e-19	7.109749e-21
44	7929624	8030007	NM_001425	EMP3		0.793017	6.653497e-24	3.458554e-19	7.860350e-21
45	7965480	8110803	NM_030782	CLPTM1L		0.789082	1.574749e-23	8.185701e-19	1.819045e-20
46	7965480	7920271	NM_019554	S100A4		0.788167	1.918687e-23	9.973526e-19	2.168158e-20
47	7958152	7989619	NM_000942	PPIB		0.788126	1.935807e-23	1.006252e-18	2.140961e-20
48	7929624	7990211	NM_000520	HEXA		0.787950	2.010913e-23	1.045293e-18	2.177693e-20
49	7965480	8030007	NM_001425	EMP3		0.787917	2.025114e-23	1.052674e-18	2.148315e-20
50	7958152	7913256	NM_005216	DDOST		0.786786	2.581114e-23	1.341689e-18	2.683378e-20

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.