[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14359.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14359	7919392	ENST00000459096

Fetching correlation data, please wait...
Getting list of correlations for id 14359.
Getting list of p-values for id 14359.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919392	7919151	ENST00000459096		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7919392	8039504	NM_001145176	SHISA7	0.710528	2.078958e-17	3.602211e-13	1.801105e-13
3	7919392	8049567	NM_005855	RAMP1	0.702254	6.992125e-17	1.211525e-12	4.038418e-13
4	7919392	7992038	NM_024042	METRN	0.698213	1.245613e-16	2.158274e-12	5.395684e-13
5	7919392	8067585	NM_080606	BHLHE23	0.695018	1.953329e-16	3.384533e-12	6.769066e-13
6	7919392	7991772	NM_005331	HBQ1	0.689472	4.205847e-16	7.287472e-12	1.214579e-12
7	7919392	7899071	ENST00000384508		0.689318	4.295580e-16	7.442951e-12	1.063279e-12
8	7919392	8096331	ENST00000364837		0.685362	7.344483e-16	1.272579e-11	1.590723e-12
9	7919392	8110631	NM_152547	BTNL9	0.680769	1.354822e-15	2.347501e-11	2.608334e-12
10	7919392	8052018	NM_022055	KCNK12	0.678311	1.871539e-15	3.242816e-11	3.242816e-12
11	7919392	7930482	NM_000681	ADRA2A	0.677452	2.093678e-15	3.627716e-11	3.297924e-12
12	7919392	8016155	NM_006688	C1QL1	0.676966	2.230740e-15	3.865203e-11	3.221002e-12
13	7919392	8084880	NM_005524	HES1	0.668326	6.738824e-15	1.167636e-10	8.981815e-12
14	7919392	8146643	hsa-mir-124-2		0.667243	7.721249e-15	1.337861e-10	9.556148e-12
15	7919392	8056041			0.667159	7.802462e-15	1.351933e-10	9.012884e-12
16	7919392	8066983	ENST00000411239		0.666057	8.954758e-15	1.551591e-10	9.697443e-12
17	7919392	8035315	NM_138454	NXNL1	0.664734	1.055771e-14	1.829334e-10	1.076079e-11
18	7919392	8121216	NM_021620	PRDM13	0.664561	1.078600e-14	1.868891e-10	1.038273e-11
19	7919392	8046276	NM_001003845	SP5	0.660969	1.679067e-14	2.909319e-10	1.531221e-11
20	7919392	8021963	NM_001071	TYMS	0.660752	1.724216e-14	2.987550e-10	1.493775e-11
21	7919392	7931181	NM_001105574	HMX3	0.660310	1.819772e-14	3.153119e-10	1.501485e-11
22	7919392	8032034	NM_001136263	C2CD4C	0.658328	2.315689e-14	4.012395e-10	1.823816e-11
23	7919392	8074558	NM_023004	RTN4R	0.657753	2.482451e-14	4.301343e-10	1.870149e-11
24	7919392	8092836	NM_001080513	CPN2	0.657471	2.568555e-14	4.450534e-10	1.854389e-11
25	7919392	8141643	NM_001015072	UFSP1	0.657303	2.621346e-14	4.542006e-10	1.816802e-11
26	7919392	7945781	NM_003311	PHLDA2	0.656748	2.802680e-14	4.856204e-10	1.867771e-11
27	7919392	7940022	NM_178570	RTN4RL2	0.656679	2.826095e-14	4.896775e-10	1.813620e-11
28	7919392	8131379	ENST00000384488		0.655975	3.075430e-14	5.328797e-10	1.903142e-11
29	7919392	8013112	NM_016084	RASD1	0.655249	3.355133e-14	5.813439e-10	2.004634e-11
30	7919392	7947363	NM_024424	WT1	0.654785	3.546777e-14	6.145501e-10	2.048500e-11
31	7919392	8091032	NM_023067	FOXL2	0.654186	3.809821e-14	6.601277e-10	2.129444e-11
32	7919392	8110382	NM_030567	PRR7	0.653311	4.227741e-14	7.325406e-10	2.289189e-11
33	7919392	8004763	NM_000180	GUCY2D	0.653010	4.382126e-14	7.592909e-10	2.300882e-11
34	7919392	8048460	NM_003936	CDK5R2	0.652373	4.725741e-14	8.188292e-10	2.408321e-11
35	7919392	8153862	NM_001024678	LRRC24	0.651524	5.225089e-14	9.053512e-10	2.586718e-11
36	7919392	8065327	NM_033176	NKX2-4	0.651402	5.300713e-14	9.184545e-10	2.551263e-11
37	7919392	7925739	ENST00000403423		0.651217	5.417424e-14	9.386770e-10	2.536965e-11
38	7919392	8059739	NM_024409	NPPC	0.650723	5.742193e-14	9.949497e-10	2.618289e-11
39	7919392	8074892	NR_003950	ZDHHC8P1	0.650493	5.899470e-14	1.022201e-9	2.621029e-11
40	7919392	7994804	NM_013292	MYLPF	0.648183	7.732796e-14	1.339862e-9	3.349654e-11
41	7919392	7901309	NM_012186	FOXE3	0.647150	8.721085e-14	1.511102e-9	3.685616e-11
42	7919392	8037872	NM_001127240	BBC3	0.646754	9.130603e-14	1.582060e-9	3.766808e-11
43	7919392	8071276	NM_080647	TBX1	0.646546	9.353626e-14	1.620703e-9	3.769076e-11
44	7919392	8131087	NM_001080461	UNCX	0.646519	9.383288e-14	1.625842e-9	3.695096e-11
45	7919392	7911750	NM_001010926	HES5	0.646220	9.713458e-14	1.683051e-9	3.740113e-11
46	7919392	8072941	NM_003614	GALR3	0.645987	9.979040e-14	1.729068e-9	3.758844e-11
47	7919392	8047736			0.645983	9.984058e-14	1.729938e-9	3.680718e-11
48	7919392	7952243	NM_015645	C1QTNF5	0.644986	1.120112e-13	1.940818e-9	4.043372e-11
49	7919392	8056959	NM_001080458	EVX2	0.643939	1.263594e-13	2.189429e-9	4.468222e-11
50	7919392	7919568			0.643844	1.277401e-13	2.213352e-9	4.426704e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation