[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 1559.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1559	8161451	AK292642	LOC554249		hypothetical LOC554249

Fetching correlation data, please wait...
Getting list of correlations for id 1559.
Getting list of p-values for id 1559.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.100 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8161451	8155393	AK292642	LOC554249	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8161451	8161353	AK292642	LOC554249	0.812678	6.673188e-26	1.156263e-21	5.781316e-22
3	8161451	8155550	AK292642	LOC554249	0.808690	1.771392e-25	3.069291e-21	1.023097e-21
4	8161451	8155490	NR_003670	KGFLP2	0.594587	2.270308e-11	3.933763e-7	9.834409e-8
5	8161451	8049567	NM_005855	RAMP1	0.588652	3.998616e-11	6.928401e-7	1.385680e-7
6	8161451	7998444	ENST00000440800		0.587709	4.370160e-11	7.572176e-7	1.262029e-7
7	8161451	8032034	NM_001136263	C2CD4C	0.582726	6.956156e-11	1.205293e-6	1.721847e-7
8	8161451	8092836	NM_001080513	CPN2	0.579748	9.150246e-11	1.585463e-6	1.981829e-7
9	8161451	7942693	NM_138706	B3GNT6	0.575917	1.296688e-10	2.246772e-6	2.496413e-7
10	8161451	7899990	NM_014284	NCDN	0.566529	2.989890e-10	5.180583e-6	5.180583e-7
11	8161451	8050190	NM_003183	ADAM17	-0.562678	4.180714e-10	7.243923e-6	6.585385e-7
12	8161451	7932308	NM_001010908	C1QL3	0.561858	4.487287e-10	7.775122e-6	6.479268e-7
13	8161451	8112072	NM_021147	CCNO	0.561466	4.641416e-10	8.042181e-6	6.186293e-7
14	8161451	7991779	NM_032039	ITFG3	0.561174	4.759898e-10	8.247476e-6	5.891054e-7
15	8161451	7900009	NM_017629	EIF2C4	-0.557919	6.288727e-10	1.089648e-5	7.264318e-7
16	8161451	7945781	NM_003311	PHLDA2	0.555968	7.421314e-10	1.285891e-5	8.036819e-7
17	8161451	8019280	NM_002861	PCYT2	0.555707	7.586568e-10	1.314525e-5	7.732498e-7
18	8161451	8093440	NM_001004356	FGFRL1	0.554557	8.359991e-10	1.448536e-5	8.047420e-7
19	8161451	8074558	NM_023004	RTN4R	0.552212	1.017692e-9	1.763355e-5	9.280814e-7
20	8161451	7926150	NM_014688	USP6NL	0.551902	1.044362e-9	1.809566e-5	9.047829e-7
21	8161451	8019778	NM_002861	PCYT2	0.550247	1.198548e-9	2.076723e-5	9.889159e-7
22	8161451	8030044	NM_170720	KCNJ14	0.549089	1.319214e-9	2.285802e-5	1.039001e-6
23	8161451	8016155	NM_006688	C1QL1	0.548435	1.392465e-9	2.412724e-5	1.049010e-6
24	8161451	8023984	NM_001194	HCN2	0.546820	1.590377e-9	2.755646e-5	1.148186e-6
25	8161451	8019074	NM_002522	NPTX1	0.545038	1.840099e-9	3.188339e-5	1.275336e-6
26	8161451	7950032	NM_002007	FGF4	0.542829	2.202022e-9	3.815444e-5	1.467478e-6
27	8161451	7940022	NM_178570	RTN4RL2	0.542369	2.285568e-9	3.960203e-5	1.466742e-6
28	8161451	7996651	NM_001012984	C16orf86	0.541425	2.466699e-9	4.274049e-5	1.526446e-6
29	8161451	7998679	NM_178167	ZNF598	0.539775	2.816504e-9	4.880157e-5	1.682813e-6
30	8161451	7899093	NM_024869	GRRP1	0.537977	3.252034e-9	5.634799e-5	1.878266e-6
31	8161451	8061940	DQ080434	C20orf144	0.537760	3.308898e-9	5.733327e-5	1.849460e-6
32	8161451	8037651	NM_175875	SIX5	0.536317	3.711046e-9	6.430130e-5	2.009416e-6
33	8161451	8131869	NR_026676	RPS2P32	0.536005	3.803974e-9	6.591145e-5	1.997317e-6
34	8161451	8064242	NR_027686	NCRNA00176	0.535722	3.890157e-9	6.740475e-5	1.982493e-6
35	8161451	8130073	NM_207360	ZC3H12D	0.535512	3.955368e-9	6.853466e-5	1.958133e-6
36	8161451	7939620	NM_152312	GYLTL1B	0.535187	4.058361e-9	7.031922e-5	1.953312e-6
37	8161451	8141643	NM_001015072	UFSP1	0.535135	4.074835e-9	7.060467e-5	1.908234e-6
38	8161451	8114215	NM_002653	PITX1	0.533928	4.481752e-9	7.765532e-5	2.043561e-6
39	8161451	7941457	NM_006848	CCDC85B	0.532445	5.034941e-9	8.724043e-5	2.236934e-6
40	8161451	8003611	NM_024792	FAM57A	0.531467	5.435299e-9	9.417743e-5	2.354436e-6
41	8161451	8158009	NM_014580	SLC2A8	0.531258	5.524457e-9	9.572227e-5	2.334690e-6
42	8161451	7998759	NM_001042371	PGP	0.530497	5.861678e-9	1.015653e-4	2.418221e-6
43	8161451	8053183	NM_001009812	LBX2	0.530149	6.022727e-9	1.043558e-4	2.426879e-6
44	8161451	7915160	NM_022157	RRAGC	-0.529380	6.393021e-9	1.107719e-4	2.517543e-6
45	8161451	8013112	NM_016084	RASD1	0.529233	6.466406e-9	1.120434e-4	2.489854e-6
46	8161451	7945550	NM_018494	LRDD	0.529046	6.560651e-9	1.136764e-4	2.471226e-6
47	8161451	8026198	NM_023072	ZSWIM4	0.529022	6.572959e-9	1.138897e-4	2.423184e-6
48	8161451	8117165	NM_003107	SOX4	0.528701	6.738537e-9	1.167586e-4	2.432472e-6
49	8161451	8012344	NM_032580	HES7	0.528285	6.958804e-9	1.205752e-4	2.460718e-6
50	8161451	8006317	ENST00000411332		0.527327	7.492349e-9	1.298199e-4	2.596399e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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