Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16021	8039933	NM_017761	PNRC2		proline-rich nuclear receptor coactivator 2

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8039933	7898910	NM_017761	PNRC2		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8039933	7935320	NM_020123	TM9SF3		0.927700	7.103732e-46	1.230864e-41	6.154318e-42
3	8039933	8083183	NM_001080415	SR140		0.920957	5.897620e-44	1.021881e-39	3.406269e-40
4	8039933	8052307	NM_001122964	SMEK2		0.914825	2.360753e-42	4.090477e-38	1.022619e-38
5	8039933	8127943	NM_153816	SNX14		0.908317	8.845752e-41	1.532703e-36	3.065407e-37
6	8039933	8105353	NM_015360	SKIV2L2		0.908099	9.939059e-41	1.722141e-36	2.870235e-37
7	8039933	8070341	NM_033656	BRWD1		0.906393	2.451781e-40	4.248200e-36	6.068858e-37
8	8039933	7916969	NM_005455	ZRANB2		0.904896	5.339794e-40	9.252262e-36	1.156533e-36
9	8039933	8052526	NM_003400	XPO1		0.901923	2.412195e-39	4.179611e-35	4.644012e-36
10	8039933	8097600	NM_003601	SMARCA5		0.901474	3.016635e-39	5.226923e-35	5.226923e-36
11	8039933	8069711	NM_015565	RNF160		0.900911	3.986344e-39	6.907138e-35	6.279216e-36
12	8039933	8105463	NM_022913	GPBP1		0.899631	7.470585e-39	1.294428e-34	1.078690e-35
13	8039933	7932678	NM_139312	YME1L1		0.898511	1.284916e-38	2.226374e-34	1.712595e-35
14	8039933	8047339	NR_026584	BZW1L1		0.898289	1.429229e-38	2.476424e-34	1.768875e-35
15	8039933	8017235	NM_006380	APPBP2		0.898228	1.472135e-38	2.550768e-34	1.700512e-35
16	8039933	8045697	NM_018151	RIF1		0.896737	2.994783e-38	5.189061e-34	3.243163e-35
17	8039933	8046604	NM_003659	AGPS		0.894680	7.838900e-38	1.358246e-33	7.989683e-35
18	8039933	7988713	NM_017672	TRPM7		0.892149	2.492584e-37	4.318900e-33	2.399389e-34
19	8039933	8173713	NM_032121	MAGT1		0.891857	2.842827e-37	4.925767e-33	2.592509e-34
20	8039933	8084016	NM_006218	PIK3CA		0.891474	3.377346e-37	5.851928e-33	2.925964e-34
21	8039933	8042270	NM_001001521	UGP2		0.890515	5.180699e-37	8.976596e-33	4.274570e-34
22	8039933	7966368	NM_002710	PPP1CC		0.890172	6.031025e-37	1.044996e-32	4.749980e-34
23	8039933	8107613	NM_003100	SNX2		0.889971	6.593198e-37	1.142403e-32	4.966971e-34
24	8039933	7989387	NM_020821	VPS13C		0.889133	9.532328e-37	1.651666e-32	6.881944e-34
25	8039933	8048014	NM_199229	RPE		0.888421	1.301119e-36	2.254449e-32	9.017798e-34
26	8039933	7930614	NM_198514	NHLRC2		0.888397	1.314892e-36	2.278313e-32	8.762741e-34
27	8039933	7930454	NM_145341	PDCD4		0.887591	1.865085e-36	3.231632e-32	1.196901e-33
28	8039933	8084146	NM_001013439	FXR1		0.886904	2.507082e-36	4.344021e-32	1.551436e-33
29	8039933	8127787	NM_015525	IBTK		0.886489	2.994858e-36	5.189191e-32	1.789376e-33
30	8039933	7978739	NM_001079537	TRAPPC6B		0.885891	3.864587e-36	6.696170e-32	2.232057e-33
31	8039933	7926836	NM_021252	RAB18		0.885560	4.447525e-36	7.706227e-32	2.485880e-33
32	8039933	8056909	NM_001880	ATF2		0.885441	4.676558e-36	8.103073e-32	2.532210e-33
33	8039933	7902594	NM_182948	PRKACB		0.885255	5.060530e-36	8.768380e-32	2.657085e-33
34	8039933	8101013	NM_015436	RCHY1		0.885245	5.080850e-36	8.803589e-32	2.589291e-33
35	8039933	7908421	NM_004600	TROVE2		0.885219	5.137382e-36	8.901543e-32	2.543298e-33
36	8039933	7908437	NM_024529	CDC73		0.884073	8.315345e-36	1.440800e-31	4.002222e-33
37	8039933	8045381	NM_058241	CCNT2		0.883661	9.874534e-36	1.710961e-31	4.624218e-33
38	8039933	8169750	NM_001042750	STAG2		0.883156	1.218052e-35	2.110518e-31	5.553996e-33
39	8039933	7977058	NM_001969	EIF5		0.883098	1.247829e-35	2.162114e-31	5.543881e-33
40	8039933	8107164	NM_015216	PPIP5K2		0.882431	1.643347e-35	2.847427e-31	7.118568e-33
41	8039933	7975113	NM_145165	CHURC1		0.882417	1.653048e-35	2.864236e-31	6.985943e-33
42	8039933	8085815	NM_001068	TOP2B		0.882258	1.764825e-35	3.057913e-31	7.280745e-33
43	8039933	7956910	NM_018448	CAND1		0.882199	1.808243e-35	3.133143e-31	7.286380e-33
44	8039933	7974566	NM_018229	MUDENG		0.881836	2.098608e-35	3.636258e-31	8.264224e-33
45	8039933	7956937	NM_015646	RAP1B		0.881655	2.259392e-35	3.914849e-31	8.699664e-33
46	8039933	8132503	NM_004760	STK17A		0.881567	2.342375e-35	4.058633e-31	8.823115e-33
47	8039933	7918825	NM_001007553	CSDE1		0.881553	2.356000e-35	4.082241e-31	8.685619e-33
48	8039933	7939137	NM_006360	EIF3M		0.881416	2.491098e-35	4.316325e-31	8.992345e-33
49	8039933	8050565	NM_015317	PUM2		0.881108	2.824533e-35	4.894068e-31	9.987893e-33
50	8039933	8085081	NM_016302	CRBN		0.881017	2.931364e-35	5.079174e-31	1.015835e-32

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.