[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16297.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16297	8178526	NM_004639	BAT3		HLA-B associated transcript 3

Fetching correlation data, please wait...
Getting list of correlations for id 16297.
Getting list of p-values for id 16297.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.073 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178526	8179782	NM_004639	BAT3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178526	8124967	NM_004639	BAT3	0.997944	9.977951e-125	1.728880e-120	8.644398e-121
3	8178526	8164464	NM_006336	ZER1	0.889774	7.190960e-37	1.245978e-32	4.153259e-33
4	8178526	8035494	NM_012181	FKBP8	0.883632	9.993462e-36	1.731567e-31	4.328918e-32
5	8178526	8030470	NM_014203	AP2A1	0.867988	4.385425e-33	7.598626e-29	1.519725e-29
6	8178526	8075009	NM_031444	C22orf13	0.861632	4.174107e-32	7.232475e-28	1.205412e-28
7	8178526	7986092	NM_002569	FURIN	0.857947	1.465476e-31	2.539230e-27	3.627472e-28
8	8178526	8145005	NM_001978	EPB49	0.855538	3.267614e-31	5.661795e-27	7.077244e-28
9	8178526	7921133	NM_004494	HDGF	0.847427	4.386155e-30	7.599890e-26	8.444322e-27
10	8178526	7959173	NM_014868	RNF10	0.844158	1.197407e-29	2.074748e-25	2.074748e-26
11	8178526	8079796	NM_022064	RNF123	0.843235	1.583601e-29	2.743906e-25	2.494460e-26
12	8178526	8002087	NM_020850	RANBP10	0.834231	2.206221e-28	3.822719e-24	3.185599e-25
13	8178526	7910241	NM_000858	GUK1	0.833834	2.469020e-28	4.278071e-24	3.290824e-25
14	8178526	8168205	NM_005938	FOXO4	0.830268	6.695426e-28	1.160116e-23	8.286546e-25
15	8178526	8032815	NM_025241	UBXN6	0.828787	1.006339e-27	1.743683e-23	1.162455e-24
16	8178526	8119161	NM_002648	PIM1	0.825946	2.174943e-27	3.768524e-23	2.355328e-24
17	8178526	7898663	NM_032409	PINK1	0.819437	1.207910e-26	2.092945e-22	1.231144e-23
18	8178526	8063583	NM_017495	RBM38	0.818318	1.610812e-26	2.791055e-22	1.550586e-23
19	8178526	8034299	NM_032377	ELOF1	0.814310	4.445104e-26	7.702032e-22	4.053701e-23
20	8178526	7938485	NM_014632	MICAL2	0.813795	5.054316e-26	8.757614e-22	4.378807e-23
21	8178526	8045009	NM_002101	GYPC	0.812875	6.354531e-26	1.101050e-21	5.243093e-23
22	8178526	7914094	NM_006990	WASF2	0.812661	6.700850e-26	1.161056e-21	5.277528e-23
23	8178526	8048468	NM_024293	FAM134A	0.810312	1.194017e-25	2.068874e-21	8.995104e-23
24	8178526	7935588	NM_000195	HPS1	0.809601	1.420048e-25	2.460517e-21	1.025216e-22
25	8178526	8119169	NM_017772	TBC1D22B	0.808846	1.705644e-25	2.955369e-21	1.182148e-22
26	8178526	8016018	NM_001143780	SLC25A39	0.807877	2.155070e-25	3.734090e-21	1.436188e-22
27	8178526	7935865	NM_013274	POLL	0.807314	2.467635e-25	4.275672e-21	1.583582e-22
28	8178526	7930398	NM_005962	MXI1	0.802935	6.964961e-25	1.206819e-20	4.310067e-22
29	8178526	8119926	NM_018426	TMEM63B	0.801161	1.052515e-24	1.823694e-20	6.288598e-22
30	8178526	8150439	NM_020476	ANK1	0.800518	1.221388e-24	2.116300e-20	7.054332e-22
31	8178526	8148737	NM_032272	MAF1	0.799427	1.569862e-24	2.720100e-20	8.774517e-22
32	8178526	7992646	NM_001694	ATP6V0C	0.797123	2.653708e-24	4.598079e-20	1.436900e-21
33	8178526	8032127	NM_138774	C19orf22	0.797077	2.681660e-24	4.646512e-20	1.408034e-21
34	8178526	8071301	NM_152906	C22orf25	0.795333	3.972032e-24	6.882341e-20	2.024218e-21
35	8178526	8172425	NM_033518	SLC38A5	0.794094	5.238000e-24	9.075882e-20	2.593109e-21
36	8178526	7911218	NM_015431	TRIM58	0.793165	6.438482e-24	1.115596e-19	3.098877e-21
37	8178526	8025183	NM_020533	MCOLN1	0.791805	8.691912e-24	1.506048e-19	4.070399e-21
38	8178526	8005707	NM_002756	MAP2K3	0.791039	1.028154e-23	1.781482e-19	4.688110e-21
39	8178526	8065569	NM_138578	BCL2L1	0.790611	1.129155e-23	1.956487e-19	5.016635e-21
40	8178526	8160647	NM_004323	BAG1	0.790517	1.152645e-23	1.997188e-19	4.992971e-21
41	8178526	8023968	NM_004359	CDC34	0.789696	1.378276e-23	2.388138e-19	5.824728e-21
42	8178526	8025766	NM_199141	CARM1	0.787662	2.139184e-23	3.706565e-19	8.825154e-21
43	8178526	7995292	NM_005629	SLC6A8	0.784476	4.218862e-23	7.310022e-19	1.700005e-20
44	8178526	8072113	NM_001013694	SRRD	0.783439	5.249185e-23	9.095264e-19	2.067105e-20
45	8178526	8001082	NM_005629	SLC6A8	0.779037	1.310037e-22	2.269902e-18	5.044226e-20
46	8178526	7998604	NM_005326	HAGH	0.778903	1.346447e-22	2.332989e-18	5.071715e-20
47	8178526	8018482	NM_012478	WBP2	0.778110	1.583996e-22	2.744590e-18	5.839553e-20
48	8178526	7899289	NM_015023	WDTC1	0.775871	2.496242e-22	4.325238e-18	9.010913e-20
49	8178526	7944560	NM_015313	ARHGEF12	0.775827	2.518872e-22	4.364450e-18	8.907041e-20
50	8178526	8026122	NM_005053	RAD23A	0.774435	3.333276e-22	5.775568e-18	1.155114e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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