[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17209.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17209	7901336	NM_018571	STRADB		STE20-related kinase adaptor beta

Fetching correlation data, please wait...
Getting list of correlations for id 17209.
Getting list of p-values for id 17209.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.086 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901336	8047443	NM_018571	STRADB	0.995602	9.539536e-108	1.652915e-103	1.652915e-103
2	7901336	8138045	NM_014413	EIF2AK1	0.889995	6.524158e-37	1.130441e-32	5.652205e-33
3	7901336	7999532	NM_002094	GSPT1	0.872870	7.165031e-34	1.241485e-29	4.138283e-30
4	7901336	7988033	NM_000119	EPB42	0.864872	1.342524e-32	2.326191e-28	5.815477e-29
5	7901336	7923503	NM_015999	ADIPOR1	0.857211	1.875370e-31	3.249454e-27	6.498907e-28
6	7901336	8018097	NM_001098832	FAM104A	0.852887	7.766663e-31	1.345730e-26	2.242883e-27
7	7901336	8072610	NM_012179	FBXO7	0.844843	9.720992e-30	1.684356e-25	2.406223e-26
8	7901336	7944560	NM_015313	ARHGEF12	0.844482	1.085134e-29	1.880212e-25	2.350265e-26
9	7901336	7899534	NM_203342	EPB41	0.843849	1.315035e-29	2.278562e-25	2.531735e-26
10	7901336	8160756	NM_015397	DCAF12	0.843435	1.490732e-29	2.582992e-25	2.582992e-26
11	7901336	7932530	NM_005028	PIP4K2A	0.832491	3.604919e-28	6.246243e-24	5.678403e-25
12	7901336	8176174	NM_002436	MPP1	0.830489	6.296978e-28	1.091077e-23	9.092312e-25
13	7901336	7961230	NM_003651	CSDA	0.828796	1.003864e-27	1.739395e-23	1.337996e-24
14	7901336	8101828	NM_005723	TSPAN5	0.828287	1.153555e-27	1.998765e-23	1.427689e-24
15	7901336	7933228	NM_001002265	MARCH8	0.827542	1.413109e-27	2.448493e-23	1.632329e-24
16	7901336	8058221	NM_015049	TRAK2	0.821941	6.297455e-27	1.091160e-22	6.819750e-24
17	7901336	7929061	NM_001010987	IFIT1B	0.820721	8.661622e-27	1.500799e-22	8.828231e-24
18	7901336	8144953	NM_001100161	XPO7	0.817610	1.930847e-26	3.345578e-22	1.858655e-23
19	7901336	8075285	NM_032204	ASCC2	0.816782	2.383676e-26	4.130196e-22	2.173787e-23
20	7901336	7977736	NM_032846	RAB2B	0.808024	2.080426e-25	3.604755e-21	1.802377e-22
21	7901336	8072113	NM_001013694	SRRD	0.805843	3.506437e-25	6.075604e-21	2.893145e-22
22	7901336	8143387	NM_013446	MKRN1	0.805380	3.914299e-25	6.782305e-21	3.082866e-22
23	7901336	8117034	NM_006877	GMPR	0.800607	1.196564e-24	2.073286e-20	9.014286e-22
24	7901336	8156706	NM_003275	TMOD1	0.800371	1.263302e-24	2.188923e-20	9.120512e-22
25	7901336	7919984	NM_003944	SELENBP1	0.796702	2.918941e-24	5.057649e-20	2.023060e-21
26	7901336	7904361	NM_017709	FAM46C	0.796464	3.079551e-24	5.335939e-20	2.052284e-21
27	7901336	8022941	NM_015476	C18orf10	0.790216	1.230674e-23	2.132388e-19	7.897733e-21
28	7901336	7959173	NM_014868	RNF10	0.786961	2.486679e-23	4.308669e-19	1.538810e-20
29	7901336	8065569	NM_138578	BCL2L1	0.786519	2.732784e-23	4.735095e-19	1.632791e-20
30	7901336	8102993	NM_002100	GYPB	0.786499	2.744852e-23	4.756005e-19	1.585335e-20
31	7901336	8020508	NM_003831	RIOK3	0.784334	4.346816e-23	7.531728e-19	2.429590e-20
32	7901336	8142886	NM_003344	UBE2H	0.783737	4.930564e-23	8.543187e-19	2.669746e-20
33	7901336	8060379	NM_178578	PSMF1	0.776307	2.285608e-22	3.960273e-18	1.200083e-19
34	7901336	8168205	NM_005938	FOXO4	0.772288	5.115091e-22	8.862919e-18	2.606741e-19
35	7901336	8075009	NM_031444	C22orf13	0.771744	5.697190e-22	9.871522e-18	2.820435e-19
36	7901336	8101762	NM_000345	SNCA	0.770104	7.869331e-22	1.363519e-17	3.787553e-19
37	7901336	8145454	NM_004331	BNIP3L	0.769058	9.656613e-22	1.673201e-17	4.522166e-19
38	7901336	8015991	NM_000342	SLC4A1	0.761093	4.432340e-21	7.679915e-17	2.021030e-18
39	7901336	8023466	NM_001012515	FECH	0.757071	9.357194e-21	1.621321e-16	4.157233e-18
40	7901336	7911218	NM_015431	TRIM58	0.755698	1.203610e-20	2.085494e-16	5.213736e-18
41	7901336	8136341	NM_199186	BPGM	0.754083	1.614975e-20	2.798267e-16	6.825041e-18
42	7901336	8175177	NM_018388	MBNL3	0.754027	1.631280e-20	2.826518e-16	6.729805e-18
43	7901336	8063478	NM_080821	C20orf108	0.752930	1.989318e-20	3.446891e-16	8.016026e-18
44	7901336	7900585	NM_004559	YBX1	0.752077	2.319529e-20	4.019048e-16	9.134200e-18
45	7901336	8119926	NM_018426	TMEM63B	0.751252	2.689237e-20	4.659642e-16	1.035476e-17
46	7901336	8021081	NM_001128588	SLC14A1	0.750990	2.818008e-20	4.882763e-16	1.061470e-17
47	7901336	8172538	NM_007075	WDR45	0.747474	5.254897e-20	9.105160e-16	1.937268e-17
48	7901336	8071301	NM_152906	C22orf25	0.745648	7.233266e-20	1.253308e-15	2.611058e-17
49	7901336	8023955	NM_001728	BSG	0.744207	9.291447e-20	1.609929e-15	3.285569e-17
50	7901336	7901376	NM_014372	RNF11	0.743787	9.991614e-20	1.731247e-15	3.462494e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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